|
Rhee et al. 2004 [9]
|
Protease
|
PI,
|
PR24, PR30, PR32,
|
(PR30,PR88) (PR46,PR90)
|
2795
| |
| |
and Reverse
|
NRTI,
|
PR46, PR47, PR48,
|
(PR73,PR90)
|
(27 Subtype C,
| |
| |
transcriptase
|
NNRTI
|
PR50, PR53, PR54,
|
(PR54,PR82,PR90)
|
15 Subtype A,
| |
| | | |
PR73, PR82, PR84,
|
(PR24,PR46,PR54,PR82)
|
7 Subtype D,
| |
| | | |
PR88, PR90
|
(PR73,PR84,PR90)
|
2746 Subtype B)
| |
| | | |
RT41, RT44, RT62,
|
(PR46,PR54,PR82,PR90)
| | |
| | | |
RT65, RT67, RT69,
|
(PR84,PR90) (PR46,PR88)
| | |
| | | |
RT70, RT74, RT115,
|
(PR46,PR73,PR90) (PR54,PR82)
| | |
| | | |
RT116, RT118, RT151,
|
(PR46,PR84,PR90)
| | |
| | | |
RT184, RT210,
|
(PR46,PR54,PR82,PR90)
| | |
| | | |
RT215, RT219
|
(PR46,PR73,PR84 PR90)
| | |
| | | | |
(PR30,PR88,PR90)
| | |
| | | | |
(PR48,PR54,PR82),
| | |
| | | | |
(PR32,PR46,PR82,PR90)
| | |
| | | | |
(PR24,PR46,PR54,PR82)
| | |
| | | | |
(PR53,PR54,PR82,PR90)
| | |
| | | | |
(PR24,PR46,PR82) (PR46,PR82)
| | |
| | | | |
(PR46,PR90) (PR30,PR46,PR88)
| | |
| | | | |
(RT41, RT184, RT215)
| | |
| | | | |
(RT41, RT184, RT210)
| | |
| | | | |
(RT41, RT215)
| | |
| | | | |
(RT67, RT70, RT184, RT219)
| | |
| | | | |
(RT70, RT184)
| | |
| | | | |
(RT41, RT210, RT215)
| | |
| | | | |
(RT184, RT215)
| | |
| | | | |
(RT41, RT118, RT184)
| | |
| | | | |
(RT210, RT215)
| | |
| | | | |
(RT41, RT67, RT118, RT210, RT215)
| | |
| | | | |
(RT74, RT184)
| | |
| | | | |
(RT67, RT70, RT184)
| | |
| | | | |
(RT67, RT69, RT70, RT184, RT219)
| | |
| | | | |
(RT41, RT67, RT184,
| | |
| | | | |
RT210, RT215)
| | |
| | | | |
(RT41, RT184)
| | |
| | | | |
(RT62, RT184)
| | |
| | | | |
(RT41, RT44, RT67, RT118)
| | |
| | | | |
(RT184, RT210, RT215)
| | |
| | | | |
(RT67, RT70, RT184, RT215, RT219)
| | |
| | | | |
(RT67, RT70, RT219)
| | |
| | | | |
(RT67, RT70)
| | |
| | | | |
(RT41, RT184, RT215)
| | |
| | | | |
(RT41, RT118, RT210, RT215)
| | |
| | | | |
(RT41, RT67, RT210, RT215)
| | |
| | | | |
(RT69, RT70)
| | |
| | | | |
(RT41, RT44, RT67, RT118,
| | |
| | | | |
RT210, RT215)
| | |
| | | | |
(RT41, RT74, RT184, RT215, RT69)
| | |
| | | | |
(RT103 RT181)
| | |
| | | | |
(RT100 RT103)(RT103 RT108)
| | |
| | | | |
(RT101 RT190)
| | |
| | | | |
(RT103 RT225)
| | |
| | | | |
(RT103 RT181 RT190)
| | |
| | | | |
(RT103 RT190)
| | |
| | | | |
(RT181 RT190)
| | |
| | | | |
(RT103 RT238)(RT101 RT103)
| | |
| | | | |
(RT108 RT181)
| | |
| | | | |
(RT101 RT181 RT190)
| | |
| | | | |
(RT98 RT103)
| | |
| | | | |
(RT103 RT108 RT181)
| | |
| | | | |
(RT103 RT188)(RT103 RT230)
| | |
|
Gonzales et al. 2003 [11]
|
Protease
|
PI,
|
RT41, RT62, RT65,
|
(RT41,RT184,RT215)
|
487
|
Fisher’s
|
| |
and Reverse
|
NRTI,
|
RT67, RT69, RT70,
|
(RT41,RT184,RT210,RT215)
|
(Subtype B)
|
exact
|
| |
transcriptase
|
NNRTI
|
RT74, RT75, RT77,
|
(RT67,RT70,RT215,RT219)
| |
test,
|
| | | |
RT115, RT116, RT151,
|
(RT41,RT67,RT69,RT210,RT215)
| |
Benjamini-
|
| | | |
RT184, RT210,
|
(RT41,RT67,RT184,RT210,
| |
Hochberg,
|
| | | |
RT215, and RT219
|
RT215,RT219)
| |
K-medoids
|
| | | |
PR24, PR30, PR32,
|
(RT41,RT67,RT69,RT70,
| | |
| | | |
PR46, PR47, PR48,
|
RT184,RT215,RT219)
| | |
| | | |
PR50, PR53, PR54,
|
(RT65,RT70,RT75,RT77,RT115„
| | |
| | | |
PR73, PR88, PR82,
|
RT116,RT151,RT184,RT219)
| | |
| | | |
PR84, and PR90
|
(PR54,PR73,PR84,PR90)
| | |
| | | | |
(PR46,PR84,PR90)
| | |
| | | | |
(PR24,PR46,PR54,PR82)
| | |
| | | | |
(PR46,PR54,PR82,PR90)
| | |
| | | | |
(PR48,PR,54,PR82)
| | |
|
Sing et al. 2005 [6]
|
Reverse
|
NRTI
|
RT41, RT43, RT44, RT62,
|
(RT41, RT210,RT215)
|
1355
|
hierarchical
|
| |
transcriptase
| |
RT67, RT69, RT70,
|
(RT67,RT70,RT219)
| |
clustering,
|
| | | |
RT74, RT75, RT77,
| | |
Fisher’s
|
| | | |
RT116, RT118, RT151,
| | |
exact test
|
| | | |
RT203, RT208,
| | | |
| | | |
RT210, RT215, RT215,
| | | |
| | | |
RT218, RT219,
| | | |
| | | |
RT219, RT223,
| | | |
| | | |
RT228, RT228
| | | |
|
Brehm et al. 2012 [41]
|
Reverse
|
NNRTI
| |
(RT184,RT348)
|
12
| |
| |
transcriptase
| | | |
(Subtype C)
| |
