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Figure 6 | BMC Bioinformatics

Figure 6

From: MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis

Figure 6

Three types of correspondence between Entrez Gene ID and MeSH ID. org.MeSH.XXX.db-type packages provide three types of correspondence between Entrez Gene ID and MeSH ID: 1) Gendoo data, in which the correspondence is assigned by a text-mining technique; 2) gene2pubmed data, in which the correspondence is assigned by manual curation of NCBI; and 3) RBBH data, in which the correspondence is assigned by using reciprocal BLASTP best hits among all possible combinations of minor organisms and major organisms.

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