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Table 2 GO and MeSH annotations for antibiotic registance Pseudomonas aeruginosa : comparison of NCBI gene descriptions, GO, and MeSH

From: MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis

Locus Symbol ID Description Gene ontology
     BP MF CC
PA3303 - 882468 (control) - - -
PA0392 - 878514 Conserved hypothetical - - -
PA4077 - 878707 Transcriptional regulator - - -
PA5199 amgS 880300 Two-component sensor Phosphorelay signal transduction system Phosphorelay sensor kinase activity -
PA5366 pstB 881628 Phosphate transport Transport - Membrane (+1)
PA5200 amgR 880301 Two-component response regulator Phosphate-containing compound metabolic process (+2) Phosphorelay response regulator activity -
PA0016 trkA 879255 Potassium uptake Transport (+1) Glutamyl-tRNA reductase activity (+1) -
PA4942 hflK 877755 Protease subunit Cytokinesis by binary fission (+2) - -
PA3014 faoA 878680 Fatty acid oxidation Cellular amino acid metabolic process (+11) Benzoylformate decarboxylase activity -
PA4398 - 881355 Two-component sensor Phosphate ion transport - -
PA5528 - 877964 Hypothetical - - -
PA1805 ppiD 878369 Peptidyl-prolyl isomerase Protein folding (+1) Chorismate synthase activity -
PA3016 - 879098 Hypothetical - - -
PA4223 - 880074 Transport Lipid transport - -
PA4960 - 878558 Amino acid metabolism L-serine biosynthetic process - -
PA0374 ftsE 883078 Cell division Cytokinesis (+2) - -
PA3013 foaB 880523 Fatty acid oxidation Cellular amino acid metabolic process (+7) Thioredoxin-disulfide reductase activity -
PA5471 - 877632 Hypothetical Translational termination - -
PA0502 - 878654 Biotin biosynthesis Biotin biosynthetic process - -
PA3194 edd 882909 Carbohydrate metabolism Generation of precursor metabolites and energy (+3) Phosphoenolpyruvate carboxylase activity -
PA1775 cmpX 877590 Cytoplasmic membrane protein - - -
PA0427 oprM 877851 Multidrug efflux transport (+1) Porin activity (+1) Membrane
PA4222 - 880073 Transport Transport - ATP-binding cassette (ABC) transporter complex
PA5369 pstS 880528 Phosphate transport - - -
PA2018 mexY 878882 Multidrug efflux Transport (+1) - Membrane (+1)
PA5285 - 878098 Hypothetical - - -
PA2604 - 882310 Conserved hypothetical - - -
PA2019 mexX 878839 Multidrug efflux Transport (+1) - -
PA4050 pgpA 879074 Phospholipid biosynthesis Cellular lipid metabolic process - -