Table 3 GO and MeSH annotations for antibiotic registance Pseudomonas aeruginosa : comparison of NCBI gene descriptions, GO, and MeSH
From: MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis
Locus | MeSH | |||||
|---|---|---|---|---|---|---|
| Â | A, p=0.0064 | B, p=0 | C, p=0.12 | D, p=0 | E, 3.9E-9 | G, p=0 |
PA3303 | - | - | - | - | - | - |
PA0392 | - | - | - | - | - | - |
PA4077 | - | - | - | - | - | - |
PA5199 | Periplasm (+7) | Bacillus subtilis (+9) | Chromosome Deletion | DNA, Bacteria (+88) | Gene Knockout (+39) | Alleles (+98) |
PA5366 | Cell Membrane (+1) | Escherichia coli (+5) | Chromosome Deletion | RNA, Bacterial (+33) | Cloning (+14) | Binding Sites (+31) |
PA5200 | Cell Membrane (+10) | Salmonella typhimurium (+11) | Urinary Tract Infections (+2) | 5’ Untranslated Regions (+115) | Amino Acid Substitution (+50) | Biofilm (+110) |
PA0016 | Cell Membrane (+8) | Enterobacteriaceae (+11) | Salmonella Infections | Acetates (+89) | Cell Fractionation (+17) | Drug Resistance, Microbial (+66) |
PA4942 | Cytoplasm (+10) | Bacillus subtilis (+10) | - | Adenosine Triphosphatases (+65) | Cloning, Molecular (+28) | Amino Acid Motifs (+73) |
PA3014 | Liver | Escherichia coli (+7) | - | Proteome (+58) | Methods (+15) | Kinetics (+37) |
PA4398 | - | - | - | - | - | - |
PA5528 | - | - | - | - | - | - |
PA1805 | Capsid (+4) | Escherichia coli (+1) | - | Sigma Factor (+31) | Mutagenesis (+13) | Cell Division (+32) |
PA3016 | - | - | - | - | - | - |
PA4223 | - | Pseudomonas aeruginosa | - | ATP-Binding Cassette Transporters (+4) | Gene Expression Profiling (+2) | Gene Expression Regulation, Bacterial (+4) |
PA4960 | - | Bacteriophage lamda | - | Alcohol Oxidoreductases (+35) | Autoradiography (+14) | Carbohydrate Metabolism (+38) |
PA0374 | Chromosomes (+4) | Escherichia coli (+2) | Chromosome Deletion | Magnesium (+42) | Culture Media (+11) | Operon (+50) |
PA3013 | Chromosomes, Bacterial (+2) | Swine (+5) | - | Acetyl Coenzyme A (+33) | Genetic Complementation Test (+8) | Promoter Regions, Genetic (+24) |
PA5471 | Ribosomes | Pseudomonas aeruginosa | - | Anti-Bacterial Agents (+8) | Microbial Sensitivity Test (+4) | Drug Resistance, Multiple (+10) |
PA0502 | - | - | - | - | - | - |
PA3194 | Cell-Free System (+2) | Salmonella typhimurium (+3) | Chromosome Aberrations | DNA, Bacterial (+45) | Spectrophotometry (+8) | Sequence Homology, Nucleic Acid (+28) |
PA1775 | - | - | - | - | - | - |
PA0427 | Brain (+6) | Animals, Newborn | Meningitis, Bacteria (+1) | Copper (+76) | Absorptiometry (+39) | DNA Damage (+67) |
PA4222 | - | - | - | - | - | - |
PA5369 | - | - | - | - | - | - |
PA2018 | Ribosomes | Escherichia coli (+1) | (+9) | Peptides (+9) | Transfection (+3) | Plasmids (+12) |
PA5285 | - | - | - | - | - | - |
PA2604 | Cytosol (+9) | Spheroplasts (+6) | - | Chaperonins (+31) | Statistics as Topic (+6) | Apoptosis (+25) |
PA2019 | - | Pseudomonas aeruginosa | - | Anti-Bacterial Agents (+4) | Electrophoretic Mobility Shift Assay | Promoter Regions, Genetic (+4) |
PA4050 | - | - | - | - | - | - |