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Table 3 GO and MeSH annotations for antibiotic registance Pseudomonas aeruginosa : comparison of NCBI gene descriptions, GO, and MeSH

From: MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis

Locus MeSH
  A, p=0.0064 B, p=0 C, p=0.12 D, p=0 E, 3.9E-9 G, p=0
PA3303 - - - - - -
PA0392 - - - - - -
PA4077 - - - - - -
PA5199 Periplasm (+7) Bacillus subtilis (+9) Chromosome Deletion DNA, Bacteria (+88) Gene Knockout (+39) Alleles (+98)
PA5366 Cell Membrane (+1) Escherichia coli (+5) Chromosome Deletion RNA, Bacterial (+33) Cloning (+14) Binding Sites (+31)
PA5200 Cell Membrane (+10) Salmonella typhimurium (+11) Urinary Tract Infections (+2) 5’ Untranslated Regions (+115) Amino Acid Substitution (+50) Biofilm (+110)
PA0016 Cell Membrane (+8) Enterobacteriaceae (+11) Salmonella Infections Acetates (+89) Cell Fractionation (+17) Drug Resistance, Microbial (+66)
PA4942 Cytoplasm (+10) Bacillus subtilis (+10) - Adenosine Triphosphatases (+65) Cloning, Molecular (+28) Amino Acid Motifs (+73)
PA3014 Liver Escherichia coli (+7) - Proteome (+58) Methods (+15) Kinetics (+37)
PA4398 - - - - - -
PA5528 - - - - - -
PA1805 Capsid (+4) Escherichia coli (+1) - Sigma Factor (+31) Mutagenesis (+13) Cell Division (+32)
PA3016 - - - - - -
PA4223 - Pseudomonas aeruginosa - ATP-Binding Cassette Transporters (+4) Gene Expression Profiling (+2) Gene Expression Regulation, Bacterial (+4)
PA4960 - Bacteriophage lamda - Alcohol Oxidoreductases (+35) Autoradiography (+14) Carbohydrate Metabolism (+38)
PA0374 Chromosomes (+4) Escherichia coli (+2) Chromosome Deletion Magnesium (+42) Culture Media (+11) Operon (+50)
PA3013 Chromosomes, Bacterial (+2) Swine (+5) - Acetyl Coenzyme A (+33) Genetic Complementation Test (+8) Promoter Regions, Genetic (+24)
PA5471 Ribosomes Pseudomonas aeruginosa - Anti-Bacterial Agents (+8) Microbial Sensitivity Test (+4) Drug Resistance, Multiple (+10)
PA0502 - - - - - -
PA3194 Cell-Free System (+2) Salmonella typhimurium (+3) Chromosome Aberrations DNA, Bacterial (+45) Spectrophotometry (+8) Sequence Homology, Nucleic Acid (+28)
PA1775 - - - - - -
PA0427 Brain (+6) Animals, Newborn Meningitis, Bacteria (+1) Copper (+76) Absorptiometry (+39) DNA Damage (+67)
PA4222 - - - - - -
PA5369 - - - - - -
PA2018 Ribosomes Escherichia coli (+1) (+9) Peptides (+9) Transfection (+3) Plasmids (+12)
PA5285 - - - - - -
PA2604 Cytosol (+9) Spheroplasts (+6) - Chaperonins (+31) Statistics as Topic (+6) Apoptosis (+25)
PA2019 - Pseudomonas aeruginosa - Anti-Bacterial Agents (+4) Electrophoretic Mobility Shift Assay Promoter Regions, Genetic (+4)
PA4050 - - - - - -