1

PhastCons score for 60way vertebrate alignments; 0 if not available

+

1.82E09

***

2

PhastCons score for placental mammal; 0 if not available

+

7.76E31

***

3

1 if PhastCons vertebrate score is available and the score is 0; 0 otherwise

+

1.55E02

*

4

1 if PhastCons placental score is available and the score is 0; 0 otherwise



4.53E04

***

5

1 if PhastCons vertebrate score is available; 0 otherwise

+

7.24E125

***

6

1 if PhastCons placental score is available; 0 otherwise

+

8.36E01
 
7

1 if base is in CpG islands; 0 otherwise

+

1.03E23

***

8

ln(x + 5), where x is the absolute number of base pairs to nearest RefSeq transcription start site

+

1.69E02

*

9

1 if base is part of repeat element based on RepeatMaster; 0 otherwise



6.07E02
 
10

1 if base is part of a transcribed region of a RefSeq gene; 0 otherwise



2.76E07

***

11

1 if base is between the start and end of the coding region of the gene; 0 otherwise



3.15E05

***

12

1 if base is part of RefSeq exon; 0 otherwise

+

7.47E03

**

13

1 if base is part of a RefSeq exon and within the coding region of the gene; 0 otherwise



2.07E105

***

14

1 if base is part of a RefSeq intron; 0 otherwise

+

2.19E02

*

15

Percentage of G or C base pairs of all bases within 50 bases in either direction

+

0.00E + 00

***

16

ln(x + 1), where x is the FPKM of nearest gene at time t



1.20E07

***

17

ln(x + 1), where x is the FPKM of nearest gene at time t + 1

+

3.81E05

***

18

1 if nearest gene is significantly upregulated from t to t + 1; 0 otherwise

+

2.05E03

**

19

1 if nearest gene is significantly downregulated from t to t + 1; 0 otherwise

+

5.77E02
 