|
1
|
PhastCons score for 60-way vertebrate alignments; 0 if not available
|
+
|
1.82E-09
|
***
|
|
2
|
PhastCons score for placental mammal; 0 if not available
|
+
|
7.76E-31
|
***
|
|
3
|
1 if PhastCons vertebrate score is available and the score is 0; 0 otherwise
|
+
|
1.55E-02
|
*
|
|
4
|
1 if PhastCons placental score is available and the score is 0; 0 otherwise
|
-
|
4.53E-04
|
***
|
|
5
|
1 if PhastCons vertebrate score is available; 0 otherwise
|
+
|
7.24E-125
|
***
|
|
6
|
1 if PhastCons placental score is available; 0 otherwise
|
+
|
8.36E-01
| |
|
7
|
1 if base is in CpG islands; 0 otherwise
|
+
|
1.03E-23
|
***
|
|
8
|
ln(x + 5), where x is the absolute number of base pairs to nearest RefSeq transcription start site
|
+
|
1.69E-02
|
*
|
|
9
|
1 if base is part of repeat element based on RepeatMaster; 0 otherwise
|
-
|
6.07E-02
| |
|
10
|
1 if base is part of a transcribed region of a RefSeq gene; 0 otherwise
|
-
|
2.76E-07
|
***
|
|
11
|
1 if base is between the start and end of the coding region of the gene; 0 otherwise
|
-
|
3.15E-05
|
***
|
|
12
|
1 if base is part of RefSeq exon; 0 otherwise
|
+
|
7.47E-03
|
**
|
|
13
|
1 if base is part of a RefSeq exon and within the coding region of the gene; 0 otherwise
|
-
|
2.07E-105
|
***
|
|
14
|
1 if base is part of a RefSeq intron; 0 otherwise
|
+
|
2.19E-02
|
*
|
|
15
|
Percentage of G or C base pairs of all bases within 50 bases in either direction
|
+
|
0.00E + 00
|
***
|
|
16
|
ln(x + 1), where x is the FPKM of nearest gene at time t
|
-
|
1.20E-07
|
***
|
|
17
|
ln(x + 1), where x is the FPKM of nearest gene at time t + 1
|
+
|
3.81E-05
|
***
|
|
18
|
1 if nearest gene is significantly up-regulated from t to t + 1; 0 otherwise
|
+
|
2.05E-03
|
**
|
|
19
|
1 if nearest gene is significantly down-regulated from t to t + 1; 0 otherwise
|
+
|
5.77E-02
| |
