Skip to main content
Figure 5 | BMC Bioinformatics

Figure 5

From: Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction

Figure 5

Pathway assembly of metabolome searcher output with heat maps of LC/MS data from the compounds file and the pathways file (tryptophan biosynthesis and asparagine biosynthesis I). This output is obtained by clicking on the pathway link for “asparagine biosynthesis I” inside the HTML file that brings up the pathway page at ProCyc. The heat maps are color-coded with green being 0, black the median value, and red the highest value within that data set. The heatmap number of 1 was at the initial time and number 2 was 24 hours later, which demonstrates the change in metabolites, from the MS list and visualized with the pathway and concentration.

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us