Figure 6
From: Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores
Comparison of the stem_mismatch ratios yielded by RKalign and CARNA. Average stem_mismatch ratios of the alignments produced by RKalign and CARNA on the 106 structure pairs selected from Dataset1 and the 124 structure pairs selected from Dataset2 respectively. Error bars are included in the figure. For Dataset1, the average stem_mismatch ratio of RKalign is 10.8% and the average stem_mismatch ratio of CARNA is 23.5%. For Dataset2, the average stem_mismatch ratio of RKalign is 13.1% and the average stem_mismatch ratio of CARNA is 28.9%. RKalign performs significantly better than CARNA in terms of stem_mismatch ratios (Wilcoxon signed rank test, p < 0.05).