Skip to main content

Table 6 Frequencies of most common confidence sets using multiple comparisons with the best with a coverage of 0.90, when drivers are unknown

From: Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling

Confidence sets Conjunction   No conjunction
  Diff PFD PND FPF   Diff PFD PND FPF
S1:OT-A, S5:OT-A 0.01 - 0.04 -   0.01 - 0.07 -
S1:OT, S1:OT-A 0.07 0.07 0.11 -   0.08 0.07 0.22 -
S1:OT-A 0.02 - 0.06 -   0.02 - 0.05 -
S5:OT-A 0.05 - - -   0.06 - - -
S5:OT, S5:OT-A 0.10 0.03 - -   0.12 0.02 - -
S5:DiP, S5:DiP-A, S5:OT, S5:OT-A 0.04 - - -   0.05 - - -
S1:OT, S1:OT-A, S5:OT, S5:OT-A 0.02 - 0.02 -   0.05 - 0.07 -
J5:OT, J5:OT-A, S5:OT, S5:OT-A 0.01 0.06 - -   - 0.04 - -
S1:CBN, S1:CBN-A 0.01 - 0.05 -   0.01 0.01 0.01 -
S1:CBN, S1:CBN-A, S1:OT, S1:OT-A - 0.01 0.25 -   0.02 - 0.14 -
J1:DiP, J1:OT, J5:DiP, J5:OT, S1:DiP, S5:DiP, S5:OT - 0.02 - 0.04   - 0.03 - 0.05
  1. Combinations not shown have a frequency less than 0.05 for all columns or are composed of more than 10 individual best methods. Frequencies normalized by column total (N = 432). ‘A:B’ denotes filtering with A and using method B.