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Table 3 The EFDR (homozygous called heterozygous) and EFNR (heterozygous called homozygous) with 100 SNPs for HMM-ASE

From: A hidden Markov approach for ascertaining cSNP genotypes from RNA sequence data in the presence of allelic imbalance by exploiting linkage disequilibrium

( λ , LD) Number of individuals
  6 12 24
   EFDR  
(8,0.5) 0.0163 (0.009) 0.0163 (0.003) 0.0230 (0.004)
(8,0.8) 0.0067 (0.003) 0.0050 (0.002) 0.0068 (0.003)
(16,0.5) 0.0050 (0.002) 0.0053 (0.001) 0.0068 (0.001)
(16,0.8) 0.0033 (0.002) 0.0025 (0.001) 0.0030 (0.001)
(24,0.5) 0.0027 (0.002) 0.0017 (0.001) 0.0030 (0.002)
(24,0.8) 0.0017 (0.002) 0.0002 (0.000) 0.0009 (0.001)
(32,0.5) 0.0017 (0.002) 0.0008 (0.001) 0.0008 (0.001)
(32,0.8) 0.0007 (0.001) 0.0008 (0.001) 0.0008 (0.000)
(56,0.5) 0.0007 (0.001) 0.0000 (0.000) 0.0008 (0.000)
(56,0.8) 0.0003 (0.001) 0.0002 (0.000) 0.0002 (0.000)
   EFNR  
(8,0.5) 0.0230 (0.003) 0.0218 (0.007) 0.0138 (0.003)
(8,0.8) 0.0113 (0.005) 0.0088 (0.004) 0.0071 (0.003)
(16,0.5) 0.0080 (0.004) 0.0063 (0.003) 0.0047 (0.002)
(16,0.8) 0.0033 (0.001) 0.0032 (0.002) 0.0028 (0.001)
(24,0.5) 0.0017 (0.002) 0.0028 (0.002) 0.0022 (0.001)
(24,0.8) 0.0020 (0.001) 0.0017 (0.001) 0.0010 (0.001)
(32,0.5) 0.0013 (0.001) 0.0005 (0.001) 0.0011 (0.001)
(32,0.8) 0.0003 (0.001) 0.0005 (0.001) 0.0004 (0.000)
(56,0.5) 0.0003 (0.001) 0.0005 (0.001) 0.0001 (0.000)
(56,0.8) 0.0003 (0.001) 0.0002 (0.000) 0.0000 (0.000)
  1. Their standard deviations are shown in the parentheses.
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BMC Bioinformatics

ISSN: 1471-2105

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