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Table 6 The EFDR (homozygous called heterozygous) and EFNR (heterozygous called homozygous) with 100 SNPs using the haplotype structures from real data

From: A hidden Markov approach for ascertaining cSNP genotypes from RNA sequence data in the presence of allelic imbalance by exploiting linkage disequilibrium

λ   Number of individuals
   6 12 24
   EFDR
8 ASE 0.0222 (0.0100) 0.0264 (0.0091) 0.0243 (0.0038)
  NASE 0.0250 (0.0064) 0.0313 (0.0103) 0.0297 (0.0060)
16 ASE 0.0026 (0.0032) 0.0023 (0.0020) 0.0043 (0.0033)
  NASE 0.0023 (0.0025) 0.0023 (0.0027) 0.0040 (0.0033)
24 ASE 0.0006 (0.0013) 0.0003 (0.0008) 0.0006 (0.0005)
  NASE 0.0006 (0.0013) 0.0000 (0.0000) 0.0003 (0.0005)
32 ASE 0.0000 (0.0000) 0.0002 (0.0006) 0.0004 (0.0005)
  NASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0000 (0.0000)
56 ASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0000 (0.0000)
  NASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0000 (0.0000)
   EFNR
8 ASE 0.0375 (0.0224) 0.0295 (0.0090) 0.0259 (0.0072)
  NASE 0.0322 (0.0193) 0.0251 (0.0080) 0.0219 (0.0048)
16 ASE 0.0028 (0.0032) 0.0030 (0.0024) 0.0033 (0.0020)
  NASE 0.0037 (0.0043) 0.0027 (0.0021) 0.0028 (0.0019)
24 ASE 0.0002 (0.0008) 0.0000 (0.0000) 0.0006 (0.0006)
  NASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0006 (0.0007)
32 ASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0000 (0.0000)
  NASE 0.0003 (0.0011) 0.0002 (0.0005) 0.0000 (0.0000)
56 ASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0000 (0.0000)
  NASE 0.0000 (0.0000) 0.0000 (0.0000) 0.0000 (0.0000)
  1. The data were generated without ASE, namely, all the heterozygous genes have ASE ratio 0.5. Their standard deviations shown in the parenthesis.