Actual | VarScan Genotype | HMM-ASE | HMM-NASE | ||||||
---|---|---|---|---|---|---|---|---|---|
genotype | He | Ho | NC | He | Ho | NC | He | Ho | NC |
 |  |  |  |  |  | (Reads =0) |  |  | (Reads =0) |
He | 449 | 78 | 64 | 571 | 0 | 20 | 570 | 1 | 20 |
Ho | 0 | 886 | 83 | 9 | 914 | 46 | 2 | 921 | 46 |
Actual | SAMTOOLS + BCFTOOLS | BEAGLE | Â | ||||||
genotype | He | Ho | NC | He | Ho | NC | Â | Â | Â |
He | 576 | 9 | 6 | 583 | 8 | 0 | Â | Â | Â |
Ho | 4 | 957 | 8 | 6 | 963 | 0 | Â | Â | Â |