From: Comparing variant calling algorithms for target-exon sequencing in a large sample
All SNPs | Singletons | %Missing genotypes | ||||||
---|---|---|---|---|---|---|---|---|
Call set | #SNPs | % dbSNP | Known Ts/Tv | Novel Ts/Tv | Overall Ts/Tv | #SNPs | Ts/Tv | |
IBC | 27500 | 25.72% | 3.02 | 2.54 | 2.71 | 16325 (59.36%) | 2.57 | 4.71 |
PBC | 27500 | 26.87% | 3.02 | 2.45 | 2.59 | 15877 (57.73%) | 2.44 | 0.47 |
LDC | 27500 | 26.85% | 3.01 | 2.45 | 2.59 | 15857 (57.66%) | 2.44 | 0.17 |
LDC + F | 27500 | 26.81% | 3.00 | 2.45 | 2.58 | 15869 (57.71%) | 2.44 | 0.17 |