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Table 2 Heterozygous mismatch (a) between sequence calls and GWAS genotypes at 378 on-target GWAS markers, (b) between 80 sequence replicate pairs and (c) between pairs of algorithms

From: Comparing variant calling algorithms for target-exon sequencing in a large sample

   Heterozygous mismatch rate
   IBC PBC LDC LDC + F
(a) All samples at 378 GWAS markers 0.82% 0.38% 0.39% 0.32%
(b) 80 sequence replicate pairs at all called variants 1.01% 0.34% 0.36% 0.20%
(c) Pairwise comparison of callers     
  vs PBC 0.42% -- -- --
  vs LDC 0.93% 0.35% -- --
  vs LDC + F 1.01% 0.41% 0.30% --