Table 1 Overview of ChIP-seq and RNA-seq sequencing data for the rat (BN and SHR), for the mouse (male and female), for the myoblast (MB) dataset from [ 36 ], and for the ENCODE cell lines

H3K27me3 BN

1

69,047,384

54,415,680

H3K27me3 BN

2

82,631,022

70,349,074

H3K27me3 BN

3

70,920,377

60,263,098

H3K27me3 SHR

1

62,894,736

49,966,171

H3K27me3 SHR

2

68,439,111

58,495,532

H3K27me3 SHR

3

68,419,655

58,433,557

Input BN

1

14,104,386

12,833,263

Input BN

2

15,381,807

14,172,254

Input BN

3

61,276,324

58,969,661

Input SHR

1

16,049,419

14,700,053

Input SHR

2

18,586,414

16,910,655

Input SHR

3

74,035,329

70,234,582

RNA-seq BN

1

168,796,774

121,417,255

RNA-seq BN

2

162,380,800

123,606,276

RNA-seq BN

3

170,100,328

129,078,242

RNA-seq BN

4

161,444,260

117,512,826

RNA-seq BN

5

144,182,176

105,095,363

RNA-seq SHR

1

164,552,150

118,500,162

RNA-seq SHR

2

166,005,952

126,920,455

RNA-seq SHR

3

149,525,162

108,870,073

RNA-seq SHR

4

120,844,554

85,337,460

RNA-seq SHR

5

138,124,004

99,015,155

H3K9me3 female

1

13,306,841

8,708,647

H3K9me3 female

2

7,860,660

3,942,578

H3K9me3 female

3

7,092,019

3,553,617

H3K9me3 male

1

12,091,621

6,274,126

H3K9me3 male

2

7,195,641

3,514,546

H3K9me3 male

3

5,703,768

2,786,109

Input

1

10,458,196

6,714,959

Input

2

4,304,875

1,940,625

Input

3

3,586,754

1,559,414

Input

4

4,482,286

1,947,833

Input

5

3,680,479

1,535,794

Input

6

14,922,773

11,291,654

RNA-seq female

1

6,245,431

4,367,593

RNA-seq female

2

13,093,629

9,257,763

RNA-seq male

1

14,086,627

11,311,584

RNA-seq male

2

8,098,083

6,476,421

MB H3K27me3

1

9,453,468

9,421,380

MB H3K27me3

2

9,924,308

9,875,240

MB H3K27me3

3

10,316,946

10,262,585

MB input

1

9,798,009

9,780,084

MB input

2

9,807,040

9,789,125

MB input

3

7,351,896

7,340,980

MB input

4

12,350,738

12,324,079

H1 H3K09me3

1

32,382,686

22,900,208

H1 H3K09me3

2

41,645,083

27,715,874

H1 H3K27me3

1

8,342,672

6,434,801

H1 H3K27me3

2

15,963,714

12,146,581

H1 H3K27me3

3

19,825,041

10,943,029

H1 H3K27me3

4

17,600,144

5,009,090

H1 H3K27me3

5

11,715,209

7,194,836

H1 H3K27me3

6

14,948,211

8,705,091

H1 H3K27me3

7

13,277,331

5,472,352

H1 H3K36me3

1

24,086,746

13,669,344

H1 H3K36me3

2

16,739,261

13,164,807

H1 H3K79me2

1

29,740,715

24,616,670

H1 H3K79me2

2

45,788,899

35,599,680

H1 input

1

13,876,810

10,813,095

H1 input

2

16,581,567

7,681,001

H1 RNA-seq

1

250,790,392

140,719,829

H1 RNA-seq

2

214,202,680

114,403,031

K562 H3K27me3

1

19,297,190

12,210,065

K562 H3K27me3

2

22,830,589

12,119,288

K562 H3K36me3

1

26,973,698

14,803,144

K562 H3K36me3

2

17,501,267

10,393,298

K562 H3K79me2

1

31,690,813

22,740,997

K562 H3K79me2

2

21,245,046

13,669,674

K562 H3K9me3

1

21,099,652

15,816,227

K562 H3K9me3

2

46,226,003

33,939,687

K562 input

1

27,579,809

19,570,350

K562 RNA-seq

1

227,177,516

134,666,953

K562 RNA-seq

2

238,106,630

158,075,847