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Table 3 Detection of qPCR validated H3K27me3 regions in the rat

From: histoneHMM: Differential analysis of histone modifications with broad genomic footprints

Region Chrom Start End qPCR validation deletion histoneHMM Diffreps Chipdiff Rseg
1 chr5 108,178,675 108,178,725 diff Y Y Y FN Y
2 chr20 3,578,026 3,578,076 diff N Y Y Y Y
3 chr20 4,476,835 4,476,885 non-diff N FP FP FP Y
4 chr20 4,677,234 4,677,284 diff Y Y Y Y Y
5 chr15 29,555,868 29,555,918 diff N Y Y FN Y
6 chr11 76,487,730 76,487,780 non-diff N FP FP FP FP
7 chr15 19,393,444 19,393,494 diff N Y Y Y FN
8 chr1 2,026,376 2,026,436 diff Y Y Y FN FN
9 chr1 2,123,750 2,123,800 diff N Y Y FN FN
10 chr13 86,915,949 86,916,000 diff N Y Y Y Y
11 chr15 30,003,020 30,003,070 diff Y Y Y Y Y
  1. “diff” stands for validated differential enrichment, and “non-diff” for validated non differential enrichment. “deletion” indicated whether the region overlaps with a genomic deletion in the SHR strain. FP = False Positives; FN = False Negatives; Y = correctly detected.