Table 2 Attributes of N. crassa assemblies produced with different filtering approaches
From: Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms
Assembly | № of TF (transfrags) | № of unique TF (UTF) | Median unique TF length | % redundant TF PERL | % redundant TF CD-HIT-EST |
|---|---|---|---|---|---|
Trinity | 35720 | 35578 | 240 | 0.4 | 0.4 |
Oases-25 | 19406 | 19193 | 1426 | 1.09 | 0.97 |
Oases-M | 73215 | 45134 | 1839 | 38.35 | 38.35 |
Oases-P | 138716 | 61293 | 1749 | 55.81 | 55.51 |