Table 3 Classification and annotation of the non-redundant N. crassa transfrags
From: Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms
Assembly | № of UTF | № of orphan UTF | № of bona fide UTF | № of orphan UTF with blast hit | № of bona fide UTF with blast hit | № of bona fide UTF with MultiPfam2go |
|---|---|---|---|---|---|---|
Trinity | 35578 | 20772 | 14806 | 266 (1.3%) | 10320 (70%) | 6523 (44%) |
Oases-25 | 19193 | 5359 | 13834 | 160 (3%) | 11438 (83%) | 6944 (50.2%) |
Oases-M | 45134 | 7453 | 37681 | 412 (6%) | 31311 (83.1%) | 18173 (48.2%) |
Oases-P | 61293 | 10848 | 50445 | 646 (6%) | 41383 (82%) | 24393 (48.4%) |