Table 3 Classification error for different imputation methods (columns) and classificaiton methods (rows)
From: Impact of missing data imputation methods on gene expression clustering and classification
Datasets | Mean | Median | KNN | BPCA | LLS | |
|---|---|---|---|---|---|---|
SVM | alizadeh-2000-v1 | 9.52 | 9.52 | 9.52 | 9.52 | 11.90 |
alizadeh-2000-v2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
alizadeh-2000-v3 | 6.45 | 6.45 | 6.45 | 6.45 | 6.45 | |
bredel-2005 | 16.00 | 16.00 | 16.00 | 16.00 | 16.00 | |
chen-2002 | 2.23 | 2.23 | 2.23 | 2.23 | 1.68 | |
garber-2001 | 16.67 | 16.67 | 18.18 | 18.18 | 19.70 | |
lapointe-2004-v1 | 1.82 | 1.82 | 1.82 | 1.82 | 1.82 | |
lapointe-2004-v2 | 17.39 | 18.84 | 15.94 | 17.39 | 20.29 | |
liang-2005 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
risinger-2003 | 21.43 | 19.05 | 19.05 | 19.05 | 19.05 | |
tomlins-2006 | 6.73 | 7.69 | 6.73 | 5.77 | 5.77 | |
tomlins-2006-v2 | 6.52 | 6.52 | 6.52 | 6.52 | 6.52 | |
KNN | alizadeh-2000-v1 | 33.33 | 33.33 | 33.33 | 30.95 | 30.95 |
alizadeh-2000-v2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
alizadeh-2000-v3 | 19.35 | 19.35 | 17.74 | 17.74 | 17.74 | |
bredel-2005 | 20.00 | 20.00 | 20.00 | 20.00 | 20.00 | |
chen-2002 | 11.73 | 11.17 | 12.29 | 12.29 | 12.29 | |
garber-2001 | 16.67 | 16.67 | 16.67 | 16.67 | 18.18 | |
lapointe-2004-v1 | 13.64 | 14.55 | 14.55 | 14.55 | 14.55 | |
lapointe-2004-v2 | 33.33 | 36.23 | 33.33 | 33.33 | 34.78 | |
liang-2005 | 2.70 | 2.70 | 2.70 | 2.70 | 2.70 | |
risinger-2003 | 23.81 | 23.81 | 23.81 | 19.05 | 23.81 | |
tomlins-2006 | 20.19 | 20.19 | 20.19 | 20.19 | 20.19 | |
tomlins-2006-v2 | 21.74 | 21.74 | 21.74 | 21.74 | 21.74 | |
NB | alizadeh-2000-v1 | 7.14 | 7.14 | 7.14 | 7.14 | 7.14 |
alizadeh-2000-v2 | 1.61 | 1.61 | 1.61 | 1.61 | 1.61 | |
alizadeh-2000-v3 | 8.06 | 8.06 | 6.45 | 6.45 | 6.45 | |
bredel-2005 | 14.00 | 14.00 | 14.00 | 14.00 | 14.00 | |
chen-2002 | 13.41 | 12.85 | 13.41 | 12.85 | 13.41 | |
garber-2001 | 22.73 | 24.24 | 22.73 | 22.73 | 22.73 | |
lapointe-2004-v1 | 23.64 | 23.64 | 23.64 | 21.82 | 22.73 | |
lapointe-2004-v2 | 31.88 | 31.88 | 33.33 | 33.33 | 33.33 | |
liang-2005 | 18.92 | 18.92 | 16.22 | 16.22 | 18.92 | |
risinger-2003 | 23.81 | 23.81 | 23.81 | 26.19 | 23.81 | |
tomlins-2006 | 15.38 | 15.38 | 14.42 | 14.42 | 14.42 | |
tomlins-2006-v2 | 17.39 | 17.39 | 17.39 | 17.39 | 17.39 | |
DT | alizadeh-2000-v1 | 28.57 | 30.95 | 11.90 | 23.81 | 23.81 |
alizadeh-2000-v2 | 8.06 | 8.06 | 14.52 | 14.52 | 14.52 | |
alizadeh-2000-v3 | 25.81 | 27.42 | 25.81 | 20.97 | 20.97 | |
bredel-2005 | 40.00 | 38.00 | 44.00 | 44.00 | 44.00 | |
chen-2002 | 6.15 | 7.82 | 7.26 | 6.70 | 6.70 | |
garber-2001 | 28.18 | 21.21 | 21.21 | 22.73 | 19.70 | |
lapointe-2004-v1 | 23.64 | 26.36 | 23.64 | 22.73 | 23.64 | |
lapointe-2004-v2 | 28.99 | 30.43 | 36.23 | 36.23 | 33.33 | |
liang-2005 | 8.11 | 8.11 | 8.11 | 8.11 | 8.11 | |
risinger-2003 | 45.24 | 45.24 | 54.76 | 50.00 | 54.76 | |
tomlins-2006 | 40.38 | 40.38 | 34.62 | 36.54 | 34.62 | |
tomlins-2006-v2 | 40.22 | 40.22 | 38.04 | 35.87 | 34.78 |