Table 2 Programs that add genotype data to the database
Program name | Table | Behavior |
|---|---|---|
geno | genotypes | populate Genotypes table |
genoi | genotypeblocks, snpblocks, marker_info | populate Genotypeblocks, snpblocks, and marker_info tables from Illumina data |
genoa | genotypeblocks, snpblocks, marker_info | populate Genotypeblocks, snpblocks, and marker_info tables from Affymetrix data |
genok | genotypeblocks, snpblocks, marker_info, members, samples, traits | populate Genotypeblocks, snpblocks, marker_info, members, samples, and traits tables from PLINK binary format data |