Table 2 List of filtering rules used for identification of sex-linked contigs; filtering rules for identification of Y-linked genes
From: Fully automated pipeline for detection of sex linked genes using RNA-Seq data
Minimal and maximal number of reads. | Each male must have at least 15 reads mapped, each female can have at most 3 reads mapped. |
Fraction of female and male reads. | female reads/(female reads + male reads) < 0.03. |
Male reads must be more abundant than female reads. | mother reads < father reads; |
mother reads < son reads; | |
daughter reads < father reads; | |
daughter reads < son reads |