Table 1 Demultiplexing statistics as an accumulation of ten synthetic data sets, totaling 12,579,549 synthetic reads
From: GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
Paired end reads | RE | # Misassigned | Misassignments | # Correctly | Sensitivity |
|---|---|---|---|---|---|
| Â | Site | Â | per million reads | demultiplexed | Â |
GBSX GBS | Y | 7 | 0.6 | 12,394,916 | 98.53% |
GBSX RAD | Y | 7 | 0.6 | 12,394,916 | 98.53% |
GBSX NA | N | 54 | 4.3 | 12,410,223 | 98.65% |
Stacks process_radtags | Y | 0 | 0.0 | 7,756,281 | 61.66% |
Stacks process_shortreads | N | 0 | 0.0 | 10,529,102 | 83.70% |
Sabre | N | 54 | 4.3 | 12,410,223 | 98.65% |
Single end reads | RE | # Misassigned | Misassignments | # Correctly | Sensitivity |
| Â | Site | Â | per million reads | demultiplexed | Â |
GBSX GBS | Y | 7 | 0.6 | 12,394,916 | 98.53% |
GBSX RAD | Y | 7 | 0.6 | 12,394,916 | 98.53% |
GBSX NA | N | 54 | 4.3 | 12,410,223 | 98.65% |
Stacks process_radtags | Y | 0 | 0.0 | 7,820,903 | 62.17% |
Stacks process_shortreads | N | 0 | 0.0 | 10,530,753 | 83.71% |
Sabre | N | 54 | 4.3 | 12,410,223 | 98.65% |