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Table 1 Demultiplexing statistics as an accumulation of ten synthetic data sets, totaling 12,579,549 synthetic reads

From: GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments

Paired end reads RE # Misassigned Misassignments # Correctly Sensitivity
  Site   per million reads demultiplexed  
GBSX GBS Y 7 0.6 12,394,916 98.53%
GBSX RAD Y 7 0.6 12,394,916 98.53%
GBSX NA N 54 4.3 12,410,223 98.65%
Stacks process_radtags Y 0 0.0 7,756,281 61.66%
Stacks process_shortreads N 0 0.0 10,529,102 83.70%
Sabre N 54 4.3 12,410,223 98.65%
Single end reads RE # Misassigned Misassignments # Correctly Sensitivity
  Site   per million reads demultiplexed  
GBSX GBS Y 7 0.6 12,394,916 98.53%
GBSX RAD Y 7 0.6 12,394,916 98.53%
GBSX NA N 54 4.3 12,410,223 98.65%
Stacks process_radtags Y 0 0.0 7,820,903 62.17%
Stacks process_shortreads N 0 0.0 10,530,753 83.71%
Sabre N 54 4.3 12,410,223 98.65%
  1. NA indicates an enzyme was not provided to GBSX for demultiplexing. The RE Site column indicates if the reads did or did not contain the ApeKI restriction enzyme sequence.