Table 2 Trimming statistics on demultiplexed reads from Table 1
From: GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
Paired end reads | RE | # Correctly | Sensitivity | Triming errors |
|---|---|---|---|---|
| Â | Site | trimmed | Â | per thousand reads |
GBSX GBS | Y | 12,381,497 | 99.89% | 1 |
GBSX RAD | Y | 12,313,669 | 99.34% | 7 |
GBSX NA | N | 12,364,365 | 99.63% | 4 |
Stacks process_radtags | Y | 7,407,377 | 95.50% | 45 |
Stacks process_shortreads | N | 7,190,394 | 68.29% | 317 |
Single end reads | RE | # Correctly | Sensitivity | Triming errors |
| Â | Site | trimmed | Â | per thousand reads |
GBSX GBS | Y | 11,878,172 | 95.83% | 42 |
GBSX RAD | Y | 10,821,969 | 87.31% | 127 |
GBSX NA | N | 10,835,239 | 87.31% | 127 |
Stacks process_radtags | Y | 7,421,337 | 94.89% | 51 |
Stacks process_shortreads | N | 7,191,440 | 68.29% | 317 |