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Table 1 Results from assembling 1,534 protein coding genes using aTRAM, a reference-based and a de novo approach

From: aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data

 

Proportion (mean, range)

P-Distance

Reciprocal best-blast

(mean, std dev)

(total 1,534)

aTRAM

0.99 (1-0.20)

0.093 (0.044)

1,530 (99.7%)

Reference

0.93 (1-0.19)

0.077 (0.022)

N/A

de novo

0.92 (1-0.16)

0.095 (0.052)

1,512 (98.92%)