Table 4 Average rank scores for the different methods on simulated datasets, measured using the modeller scores
Low indel rate | Medium indel rate | High indel rate | ||||
|---|---|---|---|---|---|---|
\(\boldsymbol {{\alpha ^{m}_{C}}}\) | \(\boldsymbol {\alpha ^{m}_{C^{+}}}\) | \(\boldsymbol {{\alpha ^{m}_{C}}}\) | \(\boldsymbol {\alpha ^{m}_{C^{+}}}\) | \(\boldsymbol {{\alpha ^{m}_{C}}}\) | \(\boldsymbol {\alpha ^{m}_{C^{+}}}\) | |
MinRisk (C), g=0 | 0.92 | 0.91 | 0.96 | 0.95 | 0.89 | 0.92 |
MinRisk (C), g=0.5 | 0.93 | 0.88 | 0.97 | 0.80 | 0.90 | 0.35 |
MinRisk (C), g=1 | 0.95 | 0.85 | 0.96 | 0.65 | 0.87 | 0.23 |
MinRisk (C +), g=0 | 0.69 | 0.88 | 0.62 | 0.96 | 0.56 | 1.00 |
MinRisk (C +), g=0.5 | 0.90 | 0.94 | 0.95 | 0.97 | 0.88 | 0.96 |
MinRisk (C +), g=1 | 0.93 | 0.92 | 0.95 | 0.91 | 0.88 | 0.74 |
MergeAlign | 0.74 | 0.57 | 0.85 | 0.67 | 0.78 | 0.63 |
S-Coffee | 0.15 | 0.05 | 0.22 | 0.03 | 0.37 | 0.00 |