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Table 7 Results on OXBench datasets

From: Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs

Number of sequences 15 33 60 122
Benchmark alignment length 144 150 152 157
Mean eq. class size 15.2 11.8 12.4 11.1
Average marginal 0.19 0.21 0.25 0.23
MinRisk rank, g=0 0.67 0.85 0.84 0.92
MinRisk rank, g=0.5 0.85 0.95 0.69 0.74
# columns in DAG 20288 26782 26221 30305
Time to read alignments (s) 0.5 0.8 1.2 2.1
Total runtime (s) 0.9 1.3 1.9 3.0
  1. Timings were carried out using a single AMD Opteron 2.3GHz core.