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Table 7 Results on OXBench datasets

From: Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs

Number of sequences

15

33

60

122

Benchmark alignment length

144

150

152

157

Mean eq. class size

15.2

11.8

12.4

11.1

Average marginal

0.19

0.21

0.25

0.23

MinRisk rank, g=0

0.67

0.85

0.84

0.92

MinRisk rank, g=0.5

0.85

0.95

0.69

0.74

# columns in DAG

20288

26782

26221

30305

Time to read alignments (s)

0.5

0.8

1.2

2.1

Total runtime (s)

0.9

1.3

1.9

3.0

  1. Timings were carried out using a single AMD Opteron 2.3GHz core.