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Table 3 Success rate values for SOM-BSfinder and other probe-mapping methods

From: Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis

Precision Method Atom type Radius (Å) Top3 SR Top1 SR
25% SOM-BSfinder all [0.5-0.8] 90% 82%
25% SOM-BSfinder all 1.6 97% 88%
  FTSite () all 1.6 97% 80%
  Q-SiteFinder all 1.6 90% 71%
15% SOM-BSfinder heavy 2.0 98% 89%
  SiteHound heavy 2.0 80-84%
  1. In the first section, SOM-BSfinder performances with its defaults parameters. In the second section, default parameters of FTSite [21,22] and Q-SiteFinder [19] were used; (*) Values for FTSite were calculated on a set of 35 targets [22]. In the last section, default parameters of SiteHound [27] were used.