100 nt window
|
T
P
%
|
F
P
2
%
|
---|
LMFEGCRND | 63.6 | 29.8 |
LMFEGCBJK | 27.3 | 15.4 |
LMFEGC | 18.2 | 9.0 |
150 nt window
|
TP%
|
FP
2
%
|
LMFEGCRND | 72.7 | 20.5 |
LMFEGCBJK | 63.6 | 9.6 |
LMFEGC | 45.5 | 3.2 |
157 nt window
|
TP%
|
FP
2
%
|
LMFEGCRND | 81.8 | 19.5 |
LMFEGCBJK | 54.5 | 8.3 |
LMFEGC | 63.6 | 2.1 |
200 nt window
|
TP%
|
FP
2
%
|
LMFEGCRND | 72.7 | 14.2 |
LMFEGCBJK | 45.5 | 6.7 |
LMFEGC | 18.2 | 1.3 |
- Classifier Performance on the eleven B. subtilis riboswitches. Constant length of 100 nt, 150 nt, 157 nt, and 200 nt used for test. T
P
% denotes percentage of true positives. F
P
2
% represent the overall percentage of sequences that are classified as riboswitches within the B. subtilis genome. 50 nt, 75 nt, and 100 nt overlaps were used for for sliding windows of lengths 100 nt, 150 nt, and 200 nt, respectively. No overlaps were used for the 157 nt window. True Positive sequences were according to maximum overlap with the location of the actual length of riboswitches.