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Table 17 Classification performance for different choices of length in B. subtilis

From: Secondary structural entropy in RNA switch (Riboswitch) identification

100 nt window

T P %

F P 2 %

LMFEGCRND

63.6

29.8

LMFEGCBJK

27.3

15.4

LMFEGC

18.2

9.0

150 nt window

TP%

FP 2 %

LMFEGCRND

72.7

20.5

LMFEGCBJK

63.6

9.6

LMFEGC

45.5

3.2

157 nt window

TP%

FP 2 %

LMFEGCRND

81.8

19.5

LMFEGCBJK

54.5

8.3

LMFEGC

63.6

2.1

200 nt window

TP%

FP 2 %

LMFEGCRND

72.7

14.2

LMFEGCBJK

45.5

6.7

LMFEGC

18.2

1.3

  1. Classifier Performance on the eleven B. subtilis riboswitches. Constant length of 100 nt, 150 nt, 157 nt, and 200 nt used for test. T P % denotes percentage of true positives. F P 2 % represent the overall percentage of sequences that are classified as riboswitches within the B. subtilis genome. 50 nt, 75 nt, and 100 nt overlaps were used for for sliding windows of lengths 100 nt, 150 nt, and 200 nt, respectively. No overlaps were used for the 157 nt window. True Positive sequences were according to maximum overlap with the location of the actual length of riboswitches.
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BMC Bioinformatics

ISSN: 1471-2105

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