Secondary structural entropy in RNA switch (Riboswitch) identification

BMC Bioinformatics

Table 21 B. subtilis riboswitches ranking under constant-length test

Name	Overlap	Rank	p-Value	Probability
TPP	82.9	347	0.0122	0.76
Guanine	90.1	535	0.0189	0.735
ATP	85.6	1159	0.0409	0.676
Lysine	83.5	2278	0.0804	0.612
Adenine	100	2459	0.0868	0.604
FMN	51.7	3880	0.1369	0.547
preQ1	80	4051	0.1429	0.541
Magnesium	62.3	4212	0.1486	0.536
Glycine	91.7	5200	0.1835	0.508
Tryptophan	100	6074	0.2143	0.484
SAM-I	68.8	12330	0.4351	0.356

Ranking probabilities of the eleven B. subtilis riboswitches within the 157 nt non-overlaping window scan of the intergenic regions of B. subtilis under the LMFEGCRND classifier. Total of 28340 sequence segments belonging to intergenic regions longer than 150 nt were analyzed. Operon coordinates: [83]. Overlap denotes the percentage of overlap of the sequence segment with the riboswitch. Column p-Value is the ranking divided by 28340. Column Probability is the classification probability that the sequence is a riboswitch.

ISSN: 1471-2105