From: Secondary structural entropy in RNA switch (Riboswitch) identification
R | Start | End | Strand | Upstream operon | Dist. to upstream | Uracil | Dist. to downstream | Downstream operon | Probability |
---|---|---|---|---|---|---|---|---|---|
1 | 3886253 | 3886352 | reverse | purP | -6993 | 0.31 | 4549 | dnaA,dnaN,recF | 0.876 |
2 | 3181557 | 3181656 | reverse | ribB,sroG | -229 | 0.33 | 1149 | ygiD | 0.865 |
3 | 3755951 | 3756050 | reverse | selA,selB | -40 | 0.33 | 149 | yiaY | 0.861 |
4 | 3490370 | 3490469 | reverse | php,yhfS,yhfT,yhfU,yhfW,yhfX | -12538 | 0.32 | 99 | ppiA | 0.854 |
5 | 4535630 | 4535729 | forward | yjhR | -1527 | 0.31 | 3302 | fimB | 0.849 |
6 | 3497220 | 3497319 | reverse | php,yhfS,yhfT,yhfU,yhfW,yhfX | -5688 | 0.33 | 6949 | ppiA | 0.849 |
7 | 3576850 | 3576949 | reverse | yhhW | -74 | 0.33 | 149 | gntK,gntR,gntU | 0.844 |
8 | 2055603 | 2055702 | reverse | asnW | -399 | 0.33 | 4299 | yeeL_1,yeeL_2 | 0.843 |
9 | 2739273 | 2739372 | reverse | rimM,rplS,rpsP,trmD | -2883 | 0.3 | 149 | aroF,tyrA | 0.842 |
10 | 2698570 | 2698669 | reverse | acpS,era,pdxJ,recO,rnc | -21 | 0.31 | 399 | shoB | 0.84 |
11 | 3945101 | 3945200 | reverse | hdfR | -1 | 0.3 | 5799 | hsrA,yieP | 0.835 |
12 | 2739223 | 2739322 | reverse | rimM,rplS,rpsP,trmD | -2933 | 0.31 | 99 | aroF,tyrA | 0.832 |
13 | 3453521 | 3453620 | reverse | bfd,bfr | -10701 | 0.32 | 149 | gspA,gspB | 0.825 |
14 | 4274265 | 4274364 | reverse | soxS | -769 | 0.32 | 1249 | yjcB | 0.822 |
15 | 1467282 | 1467381 | forward | ydbA_1 | -1259 | 0.32 | 52 | insI-2 | 0.82 |
16 | 3116880 | 3116979 | forward | pheV | -8368 | 0.33 | 2452 | C0719 | 0.819 |
17 | 790896 | 790995 | forward | aroG | -4939 | 0.26 | 3052 | acrZ | 0.817 |
18 | 2777069 | 2777168 | forward | yfjX,yfjY,yfjZ,ypjF,ypjJ | -1216 | 0.33 | 7302 | ygaQ_1,ygaQ_2 | 0.817 |
19 | 3189691 | 3189790 | reverse | glgS | -21 | 0.31 | 6999 | ribB,sroG | 0.817 |
20 | 1694096 | 1694195 | reverse | uidR | -341 | 0.33 | 49 | uidA,uidB,uidC | 0.815 |
21 | 2823699 | 2823798 | reverse | norR | -5049 | 0.31 | 149 | mltB | 0.81 |
22 | 1805258 | 1805357 | reverse | yniB | -1414 | 0.32 | 1199 | ydiY | 0.809 |
23 | 3382541 | 3382640 | reverse | yhcO | -1289 | 0.33 | 299 | mdh | 0.809 |
24 | 1868697 | 1868796 | reverse | yoaI | -3356 | 0.29 | 4249 | mipA | 0.808 |
25 | 2386449 | 2386548 | reverse | nuoA1 | -1572 | 0.31 | 49 | yfbN | 0.807 |
26 | 3617057 | 3617156 | reverse | rbbA,yhhJ,yhiI | -6596 | 0.3 | 7349 | yhhS | 0.806 |
27 | 2815604 | 2815703 | forward | micA | -2660 | 0.29 | 8202 | gutM,gutQ,srlA,srlB,srlD,srlE,srlR | 0.805 |
28 | 2943865 | 2943964 | reverse | mltA | -189 | 0.31 | 49 | tcdA | 0.804 |
29 | 1983499 | 1983598 | forward | uspC | -5245 | 0.31 | 1402 | ftnB | 0.803 |
30 | 150155 | 150254 | forward | yadD | -2236 | 0.32 | 11902 | hrpB | 0.801 |
31 | 2553093 | 2553192 | forward | amiA,hemF | -898 | 0.33 | 3652 | intZ | 0.8 |
32 | 2876452 | 2876551 | reverse | cas1,cas2,casA,casB,casC,casD,casE | -90 | 0.31 | 2149 | cysC,cysD,cysN | 0.8 |
33 | 1217949 | 1218048 | reverse | ymgD,ymgG | -3530 | 0.33 | 3299 | bluF | 0.8 |
34 | 3346238 | 3346337 | reverse | elbB,mtgA | -816 | 0.33 | 8199 | mlaB,mlaC,mlaD,mlaE,mlaF | 0.798 |
35 | 1174989 | 1175088 | reverse | ycfZ,ymfA | -4664 | 0.3 | 649 | ycfT | 0.798 |
36 | 4298873 | 4298972 | forward | gltP | -5007 | 0.26 | 12452 | rpiB | 0.797 |
37 | 585173 | 585272 | forward | appY | -1471 | 0.29 | 9602 | cusA,cusB,cusC,cusF | 0.796 |
38 | 1397665 | 1397764 | forward | ynaJ | -1970 | 0.32 | 5052 | abgR | 0.795 |
39 | 4492546 | 4492645 | forward | lptF,lptG | -6074 | 0.29 | 52 | idnK | 0.795 |
40 | 655892 | 655991 | reverse | crcB | -837 | 0.32 | 749 | dcuC | 0.795 |
41 | 266028 | 266127 | reverse | yafZ,ykfA | -331 | 0.28 | 299 | yafW2 | 0.795 |
42 | 2033559 | 2033658 | reverse | yedV,yedW | -1210 | 0.32 | 2099 | yedJ,yedR | 0.794 |
43 | 3963904 | 3964003 | reverse | aslA | -18422 | 0.32 | 299 | rhlB | 0.794 |
44 | 1463517 | 1463616 | reverse | insC-2,insCD-2,insD-2 | -2379 | 0.33 | 11899 | paaZ | 0.794 |
45 | 2650116 | 2650215 | forward | xseA | -16443 | 0.31 | 352 | sseA | 0.793 |
46 | 582654 | 582753 | forward | tfaX | -322 | 0.3 | 202 | appY | 0.793 |
47 | 4076645 | 4076744 | reverse | fdhE,fdoG,fdoH,fdoI | -1628 | 0.29 | 5099 | yihS,yihT,yihU | 0.793 |
48 | 2033409 | 2033508 | reverse | yedV,yedW | -1360 | 0.32 | 1949 | yedJ,yedR | 0.793 |
49 | 1762598 | 1762697 | forward | lpp | -6868 | 0.27 | 4452 | ydiK | 0.792 |
50 | 4501881 | 4501980 | forward | yjgZ | -2220 | 0.32 | 152 | yjhB,yjhC | 0.792 |
51 | 1676251 | 1676350 | forward | tqsA | -3231 | 0.33 | 152 | ydgH | 0.791 |
52 | 2166386 | 2166485 | forward | cyaR | -1113 | 0.32 | 302 | yegS | 0.789 |
53 | 2429322 | 2429421 | forward | folX,yfcH | -8650 | 0.28 | 6602 | flk | 0.789 |
54 | 4083889 | 4083988 | forward | yiiF | -5848 | 0.29 | 102 | fdhD | 0.789 |
55 | 2491327 | 2491426 | reverse | yfdX | -413 | 0.32 | 99 | frc | 0.789 |
56 | 1165025 | 1165124 | reverse | comR | -2349 | 0.31 | 4299 | fhuE | 0.789 |
57 | 1933126 | 1933225 | forward | purT | -2994 | 0.3 | 1502 | yebK | 0.787 |
58 | 1204407 | 1204506 | reverse | stfE,tfaE | -3284 | 0.25 | 2299 | ymfK | 0.787 |
59 | 1493112 | 1493211 | forward | trg | -929 | 0.32 | 152 | ydcJ | 0.786 |
60 | 1714050 | 1714149 | forward | gstA | -995 | 0.31 | 3802 | slyB | 0.786 |
61 | 1397615 | 1397714 | forward | ynaJ | -1920 | 0.32 | 5102 | abgR | 0.784 |
62 | 5034 | 5133 | forward | thrA,thrB,thrC,thrL | 35 | 0.27 | 152 | yaaX | 0.784 |
63 | 4547775 | 4547874 | reverse | gntP | -152 | 0.25 | 10299 | nanC,nanM | 0.784 |
64 | 2257385 | 2257484 | forward | yeiL | -3300 | 0.3 | 4452 | setB | 0.783 |
65 | 660791 | 660890 | forward | tatE | -2369 | 0.29 | 13402 | ybeL | 0.781 |
66 | 3945051 | 3945150 | reverse | hdfR | -51 | 0.29 | 5749 | hsrA,yieP | 0.781 |
67 | 2238382 | 2238481 | forward | preA,preT | -3811 | 0.33 | 3502 | yeiG | 0.779 |
68 | 925014 | 925113 | reverse | serW | -44 | 0.31 | 3249 | cspD | 0.779 |
69 | 13587 | 13686 | reverse | hokC,mokC | -3115 | 0.3 | 1849 | yaaI | 0.779 |
70 | 2734984 | 2735083 | reverse | aroF,tyrA | -1937 | 0.33 | 999 | rluD,yfiH | 0.778 |
71 | 2880686 | 2880785 | forward | iap | -4997 | 0.32 | 9502 | queD | 0.777 |
72 | 1078128 | 1078227 | forward | rutR | -3976 | 0.29 | 352 | putP | 0.776 |
73 | 187962 | 188061 | forward | cdaR | -4293 | 0.32 | 1702 | rpsB,tff,tsf | 0.776 |
74 | 497037 | 497136 | reverse | aes | -1152 | 0.25 | 7049 | priC,ybaM | 0.776 |
75 | 3181662 | 3181761 | forward | zupT | -268 | 0.3 | 1152 | yqiC | 0.775 |
76 | 593123 | 593222 | forward | appY | -9421 | 0.29 | 1652 | cusA,cusB,cusC,cusF | 0.775 |
77 | 1250189 | 1250288 | forward | ycgY | -5317 | 0.33 | 52 | dhaR | 0.775 |
78 | 3597882 | 3597981 | reverse | rpoH | -21 | 0.32 | 249 | livJ | 0.775 |
79 | 117883 | 117982 | forward | guaC | -3347 | 0.33 | 802 | ampD,ampE | 0.774 |
80 | 1073265 | 1073364 | forward | ymdF | -5739 | 0.31 | 152 | rutR | 0.774 |
81 | 3416188 | 3416287 | reverse | alaU,ileU,rrfD,rrfF,rrlD,rrsD,thrV | -5208 | 0.28 | 4749 | envR | 0.774 |
82 | 4238098 | 4238197 | forward | yjbE,yjbF,yjbG,yjbH | -296 | 0.33 | 202 | psiE | 0.773 |
83 | 3313859 | 3313958 | forward | psrO | -4390 | 0.32 | 2752 | argG | 0.773 |
84 | 238253 | 238352 | reverse | yafU | -444 | 0.29 | 2299 | rnhA | 0.773 |
85 | 2627711 | 2627810 | reverse | guaA,guaB | -1220 | 0.31 | 799 | yfgF | 0.773 |
86 | 4156263 | 4156362 | forward | argB,argC,argH | 32 | 0.3 | 202 | oxyR | 0.772 |
87 | 58274 | 58373 | forward | djlA | -46 | 0.32 | 152 | yabP,yabQ | 0.772 |
88 | 3108528 | 3108627 | reverse | yghD,yghE | -35 | 0.33 | 1399 | speC | 0.772 |
89 | 2750731 | 2750830 | reverse | ratA,ratB | -1250 | 0.31 | 2049 | grpE | 0.772 |
90 | 454057 | 454156 | forward | bolA | 5 | 0.32 | 252 | tig | 0.771 |
91 | 573621 | 573720 | forward | ybcQ | -10 | 0.26 | 2952 | essD,rrrD,rzpD | 0.771 |
92 | 905496 | 905595 | forward | amiD,ybjQ | -481 | 0.31 | 10152 | ybjD | 0.771 |
93 | 2407114 | 2407213 | reverse | yfbS | -379 | 0.32 | 2499 | lrhA | 0.771 |
94 | 1733426 | 1733525 | reverse | ydhP | -670 | 0.31 | 1349 | grxD | 0.771 |
95 | 604509 | 604608 | forward | pheP | -1902 | 0.33 | 2502 | hokE | 0.77 |
96 | 1431895 | 1431994 | forward | lomR_2,stfR,tfaR | -836 | 0.31 | 3202 | micC | 0.77 |
97 | 1395289 | 1395388 | forward | insH-4 | -124 | 0.28 | 52 | ynaJ | 0.769 |
98 | 253317 | 253416 | forward | dinB,yafN,yafO,yafP | -107 | 0.3 | 102 | prfH,ykfJ | 0.768 |
99 | 573571 | 573670 | forward | ybcQ | 40 | 0.28 | 3002 | essD,rrrD,rzpD | 0.768 |
100 | 3986826 | 3986925 | forward | glmZ | -2151 | 0.32 | 2302 | cyaA | 0.768 |