From: Secondary structural entropy in RNA switch (Riboswitch) identification
R | Start | End | Strand | Upstream operon | Dist. to upstream | Uracil | Dist. to downstream | Downstream operon | Probability |
---|---|---|---|---|---|---|---|---|---|
1 | 2239899 | 2240048 | forward | psbV | -2288 | 0.34666 | 1277 | coaD | 0.9169 |
2 | 1788275 | 1788424 | reverse | syc1657_c | -1875 | 0.19333 | 5099 | syc1649_c | 0.9156 |
3 | 1673354 | 1673503 | forward | accB | -811 | 0.22666 | 3377 | desC | 0.9078 |
4 | 734659 | 734808 | forward | syc0660_d | -635 | 0.24666 | 8177 | syc0665_d | 0.9004 |
5 | 1108388 | 1108537 | reverse | lacF | -1124 | 0.41333 | 1124 | devB | 0.8967 |
6 | 838999 | 839148 | forward | gst1 | -2009 | 0.20666 | 2552 | hisG | 0.8906 |
7 | 734734 | 734883 | forward | syc0660_d | -710 | 0.28 | 8102 | syc0665_d | 0.886 |
8 | 1674179 | 1674328 | forward | accB | -1636 | 0.28 | 2552 | desC | 0.8857 |
9 | 936254 | 936403 | forward | syc0839_d | -190 | 0.26 | 77 | syc0840_d | 0.8855 |
10 | 1706450 | 1706599 | forward | syc1578_d | -2580 | 0.28 | 5252 | gpsA | 0.8834 |
11 | 2686971 | 2687120 | reverse | syc2516_c | -462 | 0.24666 | 674 | ycf49 | 0.8809 |
12 | 464795 | 464944 | forward | syc0415_d | -1330 | 0.46 | 377 | syc0416_d | 0.8784 |
13 | 546798 | 546947 | reverse | syc0485_c | -190 | 0.26666 | 74 | syc0484_c | 0.8778 |
14 | 1527281 | 1527430 | reverse | holB | -916 | 0.34 | 6674 | syc1405_c | 0.8749 |
15 | 2251075 | 2251224 | reverse | masA | -985 | 0.25333 | 674 | syc2098_c | 0.8741 |
16 | 590779 | 590928 | reverse | syc0539_c | -11831 | 0.2 | 2624 | syc0528_c | 0.8733 |
17 | 1870479 | 1870628 | forward | syc1725_d | -722 | 0.21333 | 5102 | syc1732_d | 0.873 |
18 | 2098418 | 2098567 | forward | sui1 | -7782 | 0.27333 | 2252 | dapB | 0.8715 |
19 | 793922 | 794071 | reverse | asnS | -1542 | 0.46666 | 224 | syc0707_c | 0.8703 |
20 | 1218955 | 1219104 | reverse | trpF | -430 | 0.34 | 1799 | sycRNA024_c | 0.8703 |
21 | 1751997 | 1752146 | reverse | syc1625_c | -3772 | 0.32666 | 3899 | syc1619_c | 0.8691 |
22 | 1526981 | 1527130 | reverse | holB | -1216 | 0.32 | 6374 | syc1405_c | 0.8686 |
23 | 1120163 | 1120312 | reverse | syc1011_c | -4710 | 0.22 | 3749 | syc1002_c | 0.8684 |
24 | 69102 | 69251 | reverse | syc0062_c | -2424 | 0.18666 | 974 | syc0058_c | 0.8668 |
25 | 132050 | 132199 | reverse | argC | -633 | 0.21333 | 7724 | syc0114_c | 0.8668 |
26 | 1348202 | 1348351 | reverse | syc1238_c | -2618 | 0.22 | 1049 | syc1235_c | 0.8666 |
27 | 1674104 | 1674253 | forward | accB | -1561 | 0.26666 | 2627 | desC | 0.8663 |
28 | 479806 | 479955 | forward | syc0423_d | -3318 | 0.34666 | 302 | syc0428_d | 0.8656 |
29 | 2009813 | 2009962 | forward | syc1856_d | 36 | 0.29333 | 1352 | syc1859_d | 0.8647 |
30 | 1674554 | 1674703 | forward | accB | -2011 | 0.27333 | 2177 | desC | 0.8646 |
31 | 1372776 | 1372925 | reverse | syc1262_c | -154 | 0.28666 | 824 | gyrA | 0.863 |
32 | 702997 | 703146 | forward | syc0629_d | -3402 | 0.27333 | 3452 | acnB | 0.8622 |
33 | 1673054 | 1673203 | forward | accB | -511 | 0.29333 | 3677 | desC | 0.8622 |
34 | 971765 | 971914 | reverse | priA | -1871 | 0.3 | 1199 | psbDI | 0.861 |
35 | 2574891 | 2575040 | forward | syc2417_d | -956 | 0.21333 | 6227 | syc2423_d | 0.8585 |
36 | 2033882 | 2034031 | forward | prfA | 38 | 0.26 | 527 | alr | 0.8579 |
37 | 2633236 | 2633385 | forward | syc2468_d | -1767 | 0.22666 | 902 | rps4 | 0.8555 |
38 | 2031022 | 2031171 | reverse | mrcA | -2764 | 0.22 | 14249 | syc1864_c | 0.8549 |
39 | 1706375 | 1706524 | forward | syc1578_d | -2505 | 0.29333 | 5327 | gpsA | 0.8543 |
40 | 69327 | 69476 | reverse | syc0062_c | -2199 | 0.21333 | 1199 | syc0058_c | 0.8532 |
41 | 2383320 | 2383469 | forward | syc2228_d | -2586 | 0.26 | 1052 | natB | 0.8531 |
42 | 2162031 | 2162180 | forward | syc2015_d | -852 | 0.33333 | 5402 | pilB | 0.8527 |
43 | 1848963 | 1849112 | forward | syc1711_d | -916 | 0.23333 | 6527 | syc1716_d | 0.8521 |
44 | 437513 | 437662 | forward | syc0392_d | -5939 | 0.35333 | 677 | syc0396_d | 0.8509 |
45 | 1108838 | 1108987 | reverse | lacF | -674 | 0.30666 | 1574 | devB | 0.8508 |
46 | 1763242 | 1763391 | forward | syc1627_d | -4972 | 0.26 | 5027 | aroE | 0.8504 |
47 | 298041 | 298190 | reverse | syc0257_c | -92 | 0.40666 | 224 | syc0256_c | 0.8502 |
48 | 1357802 | 1357951 | reverse | uppS | -635 | 0.22 | 749 | gidB | 0.8501 |
49 | 1674704 | 1674853 | forward | accB | -2161 | 0.34666 | 2027 | desC | 0.8495 |
50 | 2225318 | 2225467 | reverse | syc2077_c | -5809 | 0.26666 | 1724 | rfaG | 0.8493 |
51 | 1967731 | 1967880 | reverse | amt1 | -197 | 0.26 | 974 | syc1819_c | 0.8483 |
52 | 1108913 | 1109062 | reverse | lacF | -599 | 0.34666 | 1649 | devB | 0.848 |
53 | 2664277 | 2664426 | forward | syc2500_d | -688 | 0.24666 | 1502 | pcrA | 0.8477 |
54 | 838924 | 839073 | forward | gst1 | -1934 | 0.18 | 2627 | hisG | 0.8469 |
55 | 1996234 | 1996383 | reverse | sycRNA048_c | -2339 | 0.26 | 4799 | syc1843_c | 0.8453 |
56 | 1674479 | 1674628 | forward | accB | -1936 | 0.29333 | 2252 | desC | 0.8435 |
57 | 1320549 | 1320698 | reverse | ssb | -269 | 0.26 | 1349 | syc1209_c | 0.8421 |
58 | 542490 | 542639 | forward | syc0480_d | -2611 | 0.28 | 19127 | syc0503_d | 0.8419 |
59 | 1089898 | 1090047 | reverse | nhaS4 | -886 | 0.2 | 974 | syc0972_c | 0.8417 |
60 | 2383395 | 2383544 | forward | syc2228_d | -2661 | 0.27333 | 977 | natB | 0.8416 |
61 | 2201969 | 2202118 | reverse | syc2052_c | -3184 | 0.32666 | 3074 | gcvH | 0.8408 |
62 | 2475474 | 2475623 | forward | syc2315_d | -359 | 0.28666 | 4427 | syc2322_d | 0.8399 |
63 | 1910646 | 1910795 | forward | psaL | -4022 | 0.21333 | 752 | syc1766_d | 0.8391 |
64 | 2244572 | 2244721 | forward | syc2089_d | -2066 | 0.26 | 902 | syc2094_d | 0.8378 |
65 | 2202119 | 2202268 | reverse | syc2052_c | -3034 | 0.33333 | 3224 | gcvH | 0.8378 |
66 | 979835 | 979984 | reverse | hemL | -205 | 0.31333 | 149 | syc0880_c | 0.8371 |
67 | 2201519 | 2201668 | reverse | syc2052_c | -3634 | 0.32 | 2624 | gcvH | 0.8366 |
68 | 2436792 | 2436941 | forward | htpG | -4101 | 0.35333 | 3227 | syc2285_d | 0.8358 |
69 | 2379191 | 2379340 | forward | syc2225_d | -348 | 0.22666 | 977 | syc2228_d | 0.8347 |
70 | 751797 | 751946 | forward | syc0670_d | -2744 | 0.20666 | 3527 | syc0679_d | 0.8335 |
71 | 2488156 | 2488305 | forward | syc2327_d | -3334 | 0.24666 | 2402 | syc2333_d | 0.8333 |
72 | 1099747 | 1099896 | forward | syc0978_d | -5042 | 0.31333 | 1727 | psaC | 0.8327 |
73 | 316592 | 316741 | forward | moaA | -195 | 0.38 | 302 | syc0272_d | 0.8319 |
74 | 979910 | 980059 | reverse | hemL | -130 | 0.29333 | 224 | syc0880_c | 0.8319 |
75 | 636787 | 636936 | forward | prk | -916 | 0.22 | 1802 | syc0569_d | 0.8318 |
76 | 1709000 | 1709149 | forward | syc1578_d | -5130 | 0.26666 | 2702 | gpsA | 0.8317 |
77 | 888391 | 888540 | forward | syc0774_d | -22228 | 0.19333 | 14402 | syc0808_d | 0.8304 |
78 | 542940 | 543089 | forward | syc0480_d | -3061 | 0.29333 | 18677 | syc0503_d | 0.8303 |
79 | 1736496 | 1736645 | reverse | gyrB | -7265 | 0.24666 | 1724 | aroF | 0.83 |
80 | 542265 | 542414 | forward | syc0480_d | -2386 | 0.28 | 19352 | syc0503_d | 0.8299 |
81 | 482179 | 482328 | reverse | syc0432_c | -3508 | 0.2 | 2249 | rpl33 | 0.8299 |
82 | 882016 | 882165 | forward | syc0774_d | -15853 | 0.2 | 20777 | syc0808_d | 0.8297 |
83 | 2239824 | 2239973 | forward | psbV | -2213 | 0.32666 | 1352 | coaD | 0.8293 |
84 | 55214 | 55363 | forward | syc0043_d | -1501 | 0.24666 | 4802 | syc0049_d | 0.8292 |
85 | 707052 | 707201 | reverse | syc0639_c | -3061 | 0.22 | 824 | syc0636_c | 0.8292 |
86 | 992221 | 992370 | reverse | syc0895_c | -5003 | 0.34 | 2099 | eno | 0.8289 |
87 | 234289 | 234438 | reverse | syc0202_c | -357 | 0.38666 | 149 | syc0201_c | 0.828 |
88 | 1674629 | 1674778 | forward | accB | -2086 | 0.29333 | 2102 | desC | 0.8278 |
89 | 1788200 | 1788349 | reverse | syc1657_c | -1950 | 0.16 | 5024 | syc1649_c | 0.8273 |
90 | 1084661 | 1084810 | reverse | nfrC | -959 | 0.21333 | 449 | syc0967_c | 0.8273 |
91 | 131975 | 132124 | reverse | argC | -708 | 0.22 | 7649 | syc0114_c | 0.8271 |
92 | 632779 | 632928 | reverse | petH | -327 | 0.32666 | 3599 | syc0562_c | 0.8269 |
93 | 2612915 | 2613064 | reverse | syc2455_c | -5717 | 0.28666 | 2624 | syc2447_c | 0.8266 |
94 | 539354 | 539503 | reverse | pdhC | -603 | 0.22666 | 3074 | syc0476_c | 0.8263 |
95 | 2360335 | 2360484 | reverse | syc2221_c | -10564 | 0.19333 | 899 | recJ | 0.8245 |
96 | 503343 | 503492 | reverse | syc0452_c | -2439 | 0.26 | 1274 | syc0448_c | 0.8242 |
97 | 621230 | 621379 | reverse | syc0558_c | -3271 | 0.20666 | 299 | syc0552_c | 0.8195 |
98 | 2077186 | 2077335 | reverse | syc1942_c | -5748 | 0.18666 | 1349 | apcF | 0.8187 |
99 | 971165 | 971314 | reverse | priA | -2471 | 0.28 | 599 | psbDI | 0.8163 |
100 | 1555584 | 1555733 | reverse | syc1449_c | -12609 | 0.35333 | 8549 | pepP | 0.815 |