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Table 9 Classification performance in dinucleotide shuffling test

From: Secondary structural entropy in RNA switch (Riboswitch) identification

Classifier

TP%

FP%

LMFEGCBJKbp

65.2

0.7

LMFEGCBJK

69.6

0.7

LMFEGCRND

69.6

3.3

LMFEGC

69.6

0.7

LGCGUSIL

0.0

0.0

LMFEGCFFT

65.2

1.3

LMFEGCShapes

73.9

0.7

  1. Actual length of sequences used in this test. Column Features denotes features used from the training set. T P % denotes percentage of true positives. F P % represent the percentages of dinucleotide shuffles that are misclassified as riboswitches. Please see Methods section for details on preparing dinucleotide shuffles.
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BMC Bioinformatics

ISSN: 1471-2105

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