Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest

BMC Bioinformatics

Table 4 Average model quality measures of homology modeling results of 46 benchmark targets obtained by ModellerCSA using σ _RF , σ _Modeller , and σ _native are shown

	T M _max	T M _Emin	T M _avg	l D D T _max	l D D T _Emin	l D D T _avg
σ _native	0.756	0.734	0.710	0.661	0.650	0.648
σ _RF	0.730	0.722	0.707	0.636	0.630	0.626
σ _Modeller	0.727	0.719	0.691	0.635	0.630	0.624
No. of improved targets	32/46	33/46	34/46	29/46	29/46	30/46

ISSN: 1471-2105