Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest

BMC Bioinformatics

Table 5 Average model quality measures of homology modeling results of 46 benchmark targets obtained by original Modeller using σ _RF , σ _Modeller , and σ _native are shown

	T M _max	T M _Emin	T M _avg	l D D T _max	l D D T _Emin	l D D T _avg
σ _native	0.764	0.744	0.743	0.635	0.617	0.616
σ _RF	0.741	0.719	0.719	0.609	0.595	0.593
σ _Modeller	0.735	0.721	0.719	0.607	0.595	0.592
No. of improved targets	36/46	21/46	22/46	27/46	22/46	29/46

ISSN: 1471-2105