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Table 5 Average model quality measures of homology modeling results of 46 benchmark targets obtained by original Modeller using σ RF , σ Modeller , and σ native are shown

From: Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest

  T M max T M Emin T M avg l D D T max l D D T Emin l D D T avg
σ native 0.764 0.744 0.743 0.635 0.617 0.616
σ RF 0.741 0.719 0.719 0.609 0.595 0.593
σ Modeller 0.735 0.721 0.719 0.607 0.595 0.592
No. of improved targets 36/46 21/46 22/46 27/46 22/46 29/46
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