Table 2 Evaluation of the quality of the alignment results produced by four genome aligners on 174 collinear pairs of bacterial genomes
From: YOC, A new strategy for pairwise alignment of collinear genomes
Raw coverage (%) | Coverage after GRAPe filtering (%) | GRA-FIL criterion (%) | |||||||
|---|---|---|---|---|---|---|---|---|---|
Average | Min | Max | Average | Min | Max | Average | Min | Max | |
MGA | 91.5% | 74% | 99% | 89% | 70% | 99% | 2.5% | 0% | 13% |
LAGAN | 100% | 100% | 100% | 95% | 79% | 100% | 5% | 0% | 21% |
MAUVE | 95.2% | 78% | 100% | 92.8% | 58% | 99% | 2.4% | 0% | 35% |
YOC | 93.3% | 74% | 100% | 92.5% | 72% | 100% | 0.8% | 0% | 4% |