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MAUVE
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ProgressiveMAUVE
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YOC
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Lactococcus lactis IL1403 compared to SK11
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#Backbone segments | 3121 | 759 | 165 |
Mean coverage | 64% | 77% | 79% |
Backbone identity% | 89% | 86% | 85% |
#included orthologs | 370 [27%] | 1 173 [85%] | 1 287 [92%] |
#overlapping orthologs | 957 [69%] | 193 [14%] | 33 [2%] |
#excluded orthologs | 68 | 29 | 75 |
Orthologs coverage | 82.9% | 97.4% | 95.2% |
- Basic indicators and biological relevance of three genome alignments (post-processed into backbone segments) produced by MAUVE, ProgressiveMAUVE and YOC for the comparison of two Lactococcus lactis genomes: the subsp. lactis. IL1403 strain genome and the subsp. cremoris. strain SK11 genome. The criteria are the number of backbone segments (#Backbone segments), the mean coverage of the backbone (Mean coverage), the percentage of identity of the backbone (Backbone identity%), the number of orthologs included in the backbone (#included orthologs), overlapping the backbone (#overlapping orthologs) and excluded from the backbone (#excluded orthologs), and the orthologous cumulative length coverage in the backbone (Orthologs coverage) The orthologous genes were extracted from the OMA database [42].