Table 2 Comparison of the run-times (in seconds) of different denoising pipelines
From: FlowClus: efficiently filtering and denoising pyrosequenced amplicons
| Â | FlowClus, min. filtering | FlowClus, with filtering* | AmpliconNoise** | QIIME |
|---|---|---|---|---|
Number of reads denoised | 40627 | 34592 | 31868 | 36281 |
Filtering | 63 | 64 | 5568 | 2211 |
Denoising | clustering: 16 | clustering: 8 | 16536 | 35796 |
trie: 3 | trie: 2 |