Table 2 The number of correctly identified PSMs by OpenMS-Simulator and SEQUEST on dataset PAe000350 and PAe000351
From: OpenMS-Simulator: an open-source software for theoretical tandem mass spectrum prediction
Dataset | FDR = 0.005 | FDR = 0.01 | ||
|---|---|---|---|---|
| Â | SEQUEST | OpenMS- | SEQUEST | OpenMS- |
| Â | Â | Simulator | Â | Simulator |
PAe000350 | 7,983 | 12,001 | 9,070 | 14,012 |
PAe000351 | 5,257 | 7,935 | 5,617 | 8,551 |