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Table 10 Parameter values used for RF model tuning

From: PaPI: pseudo amino acid composition to score human protein-coding variants

Parameter

Used in

Values

# trees

RF

5, 10, 50, 100, 150, 200, 250, 300, 350

# features per node

RF

int (log (# trees) +1), 2, 4

λ

PseAAC

4, 8, 12, 16, 20

w

PseAAC

0.5, 0.1

  1. List of parameters and relative values used for the optimization of the RF model on training sets.
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BMC Bioinformatics

ISSN: 1471-2105

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