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Table 7 Missing rates on the three unfiltered test sets

From: PaPI: pseudo amino acid composition to score human protein-coding variants

 

% Missing rate

Set #1

Set #2

Set #3

PolyPhen2

7.66

7.68

7.34

SIFT

10.41

10.39

9.8

Carol

11.05

11.44

10.98

PROVEAN

9.85

9.89

9.34

FATHMM

7.64

7.72

7.09

MutationAssessor

9.78

9.72

9.58

LRT

22.99

22.82

22.23

PaPI

0

0

0

  1. Missing rates (i.e. algorithm unable to provide prediction) of considered algorithms on the three unfiltered test sets.
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BMC Bioinformatics

ISSN: 1471-2105

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