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Figure 5 | BMC Bioinformatics

Figure 5

From: Ambivalent covariance models

Figure 5

Example for ALTERNAL CMs: Input MSA and S S cons is given in A. The guide‐tree for S S match is shown in B. The \(\mathcal {G}_{5}\)‐style CFG of the model is shown in C. Terminal parser b reads one base from the input sequence, while r0 consumes a potentially empty region of consecutive bases. The first rule facilitates a glocal alignment.

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