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Table 3 Running time in minutes of proteinortho and porthoDom with and porthoDom without pfam_scan.pl for the domain annotation

From: Domain similarity based orthology detection

Name

Proteinortho

PorthoDom

PorthoDom

  

(with pfam_scan.pl)

(no pfam_scan.pl)

Run 1

1587

627

279

Run 2

1588

649

272

Run 3

1588

623

269

Mean

1587.6

633

273.3