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Figure 1 | BMC Bioinformatics

Figure 1

From: DOCKSCORE: a webserver for ranking protein-protein docked poses

Figure 1

The methodology and parameters of the webserver. All the input options are listed and a link for sample run is provided. Link for help page and methods behind the webserver are also provided. Different parameters which are considered for performing scoring: The user can select the parameters to be used for scoring. For assessing the conservation of interface residues, user can select the parameters for collection of homologs and the conservation score cut-off can be set to 60 if close homologues are employed, however when distant homologues are included in the alignment, this threshold should be set to 40.

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