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Table 1 Interface analysis

From: DOCKSCORE: a webserver for ranking protein-protein docked poses

Chain A

Chain B

Native

Ranked next to native

Native

Ranked next to native

Q110

D108

Q73

P69

E111

Q110*

Y75

Q73*

D114

E111*

R79

Y75*

T118

T118*

I80

N76

R121

R121*

D81

R79*

K125

V131*

L84

I80*

V131

S132*

Y85

D81*

S132

P133*

 

L84*

P133

K134*

  

K134

D135*

  

D135

   
  1. In the example of 1SYX, the native complex was ranked as the first pose using DockScore. The pose ranked next to the native complex was structurally very similar to the native pose and the interface residues were overlapping with the native complex interface residues (marked in asterisk).
  2. *Overlapping interface residues between native and the pose ranked second.
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BMC Bioinformatics

ISSN: 1471-2105

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