Table 2 Motif databases compared in the current study
From: Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data
Database | Number of | Status | Link | Publication |
|---|---|---|---|---|
| Â | matrices | Â | Â | Â |
| Â | (vertebrate) | Â | Â | Â |
HOCOMOCO v.9 (2013) | 426 | public | [14] | |
Jaspar vertebrates (2014) | 821 | public | [16] | |
HT-SELEX (2013) | 820 | public | http://www.sciencedirect.com/science/ article/pii/S0092867412014961?via=ihub | [13] |
SwissRegulon (2013) | 190 | public | [15] | |
TRANSFAC Professional 2013.1 | 1435 | commercial | [9] | |
MatBase v.9.0 (2012) | 907 | commercial | [23] |