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Table 8 Disease association of mRNAs selected by categorical regression-based FE and BAHSIC

From: Principal component analysis-based unsupervised feature extraction applied to in silico drug discovery for posttraumatic stress disorder-mediated heart disease

RefSeq mRNA

Gene

Heart disease association ( P -values: mouse, human)

 

Categorical regression-based FE

NM_011652

Ttn

Cardiomyopathy, dilated (5.49×10−7, 1.80×10−10); Cardiomyopathies (1.5×10−4, 9.19×10−5); Cardiomyopathy, hypertrophic (5.6×10−3, 4.74×10−10); Heart defects, congenital (1.90×10−2, —); Heart failure (—, 1.02×10−5); Cardiomyopathy, hypertrophic, familial (—, 1.02×10−5)

NM_019494

Cxcl11

Cardiomyopathy, hypertrophic (—, 3.05×10−2)

NM_001177374

Ubr2

Heart Defects, congenital (8.64×10−4, —); Cardiomegaly (1.46×10−3, —)

NM_008093

Gata5

Heart defects, congenital (1.40×10−7, —); Heart septal defects (4.12×10−3, —); Hypertrophy, right ventricular (1.36×10−4, —); Cardiovascular abnormalities (1.49×10−3, —); Cardiomyopathy, dilated (8.14×10−3, —); Cardiomyopathies (9.27×10−3, —); Cardiomegaly (1.75×10−2, 7.60×10−3)

NM_011828

Hs2st1

Cardiomyopathies (3.87×10−3, —);

BAHSIC

NM_009722

Atp2a2

Cardiomegaly (7×10−21, 1.33×10−3); Cardiomyopathy, dilated (2.68−12, 7.37−9); Cardiomyopathies (5.87×10−12, 9.69 × 10−4); Heart Failure (6.50 × 10−12, —); Cardiac Output, low (2.01 × 10−7, —); Arrhythmias, cardiac (8.85 ×10−7, —); Hypertrophy, left ventricular (3.03×10−6, 3.38×10−2); Myocardial reperfusion injury (2.33×10−5, —) Myocardial stunning (3.42×10−3, —); Atrial fibrillation (5.42×10−3, —); Myocardial infarction (6.11×10−3, —); Heart disease (2.38×10−2, 7.00×10−4); Ventricular dysfunction, left (2.74×10−2, 3.4×10−4); Cardiomyopathy, restrictive (—, 2.12×10−3); Myocardial ischemia (—, 2.91×10−3); Mitral valve insufficiency (—, 3.68×10−3); Cardiomyopathy, hypertrophic (—, 3.49×10−2)

NM_001164171

Myh6

(Already identified by CPCAFE)

NM_008725

Nppa

Heart Defects, congenital (2.53×10−55, 9.09×10−9); Cardiomegaly (1.11×10−28, —); Cardiomyopathies (7,57×10−17, —); Hypertrophy, left ventricular (9.16×10−12, 1.19×10−13); Cardiomyopathy, dilated (6.47×10−11, 2.41×10−8); Heart disease (9,72×10−8, 1.11×10−4); Endocardial cushion defects (3.51×10−6, —); Heart septal defects (4.63×10−6, —); Cardiovascular abnormalities (6.34×10−5, —); Tachycardia, ectopic atrial (1.97×10−4, —); Arrhythmias, cardiac (4.35×10−4, —); Cardiomyopathy, hypertrophic, familial (4.90×10−3, —); Heart septal defects, ventricular (5.70×10−3, —); Hypertrophy, right ventricular (1.04×10−2, —); Heart failure (1.04×10−2, 5.07×10−29); Cardiomyopathy, hypertrophic (2.20×10−2, 4.40×10−2) Ventricular dysfunction, left (—, 3.04×10−10); Myocardial reperfusion injury (— 1.76×10−7); Cardiovascular disease (—, 4.21×10−6); Myocardial infarction (—, 9.73×10−6); Mitral valve insufficiency (—, 1.04×10−5); Heart valve disease (—, 3.27×10−5); Myocardial ischemia (—, 1.49×10−4); Ventricular dysfunction (—,.198×10−3); Cardiomyopathy, restrictive (—, 2.68×10−2); Ventricular dysfunction, right (—, 3.53×10−3)

NM_008103

Gcm1

Heart defects, congenital (6×10−3, —)

NM_009608

Actc1

Heart defects, congenital (2.54×10−38, —); Cardiomyopathy, dilated (6.55×10−9, 2.16×10−14); Heart septal defects (5.15×10−7, 6.80×10−4); Arrhythmias, cardiac (4.90×10−5, —); Cardiomyopathies (2.75×10−4, 1.23×10−2); Heart septal defects, atrial (1.33×10−3); Cardiovascular abnormalities (3.85×10−2, —); Cardiomegaly (4.45×10−2, 1.01×10−4); Cardiomyopathy, hypertrophic (—, 4.91×10−13); Cardiomyopathy, hypertrophic, familial (—, 1.97×10−6); Cardiomyopathy, restrictive (—, 5.87×10−4); Heart septal defects, atrial (—, 1.73×10−3); Hypertrophy, left ventricular (—, 1.09×10−2)

NM_013468

Ankrd1

Heart defects, congenital (3.98×10−12, 4.70×10−5); Cardiomegaly (2.52×10−6, 1.00×10−2); Cardiomyopathies (9.11×10−5, —); Heart septal defects (6.18×10−4, —); Cardiomyopathy, hypertrophic, familial (9.66×10−4, —); Cardiomyopathy, dilated (1.22×10−2, 1.22×10−2); Heart failure (—, 3.04×10−4); Hypertrophy, left ventricular (—, 7.55×10−3)

NM_011540

Tcap

(Already identified by CPCAFE)

NM_177369

Myh8

(Already identified by CPCAFE)

NM_007450

Slc25a4

(Already identified by CPCAFE)

NM_010174

Fabp3

(Already identified by CPCAFE)

NM_008084

Gapdh

(Already identified by CPCAFE)

NM_019494

Cxcl11

Already identified by categorical regression based FE

NM_013463

Gla

Cardiomyopathy, hypertrophic (—, 2.46×10−2); Heart disease (—, 2.64×10−2); Cardiomyopathies (—, 3.10×10−2)

NM_001038592

Glrx2

Myocardial reperfusion injury (—, 1.56×10−3)

  1. P-values obtained from the Gendoo server for both mouse and human. Genes annotated as “Already identified by CPCAFE” are listed in Table 5.