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Table 1 Average performance (and standard deviation) in terms of GDT and RMSD, and associated p-values

From: Customised fragments libraries for protein structure prediction based on structural class annotations

 

No class annotation

CATH class annotation

SCOP class annotation

Structure based

Sequence based (MODAS predictions)

Structure based

Sequence based (MODAS predictions)

GDT

46.04 (13.89)

48.62 (14.22) p = 0.00007

47.64 (14.10)

48.92 (14.97) p = 0.0002

48.31 (15.14)

RMSD

6.4 (2.3)

6.0 (2.2) p = 0.0005

6.1 (2.2)

6.0 (2.3) p = 0.004

6.1 (2.3)

  1. Sequence based annotations are the one taken from MODAS predictions. GDT and RMSD are the average of the GDT_TS and RMSD of the 70 targets, which in turn, are the average of the highest and lowest 10 scores respectively.