From: Is this the right normalization? A diagnostic tool for ChIP-seq normalization
Modification | Library size, | Library size, “-2” | % of library |
---|---|---|---|
bp | filtration, bp | used | |
CTCF [38] | 15,995,367 | 14,378,395 | 90 |
H3K4me3 [38] | 18,466,608 | 17,047,383 | 92 |
H3K27me3 [38] | 12,594,070 | 11,802,201 | 94 |
H3K36me3-1 [38] | 16,675,805 | 14,397,781 | 86 |
H3K36me3-5 [38] | 20,189,813 | 17,194,818 | 85 |
H3K36me3-8 [38] | 19,588,306 | 16,700,104 | 85 |
H3K36me3-pooled [38] | 56,453,924 | 48,292,703 | 86 |
Input [38] | 19,672,479 | 17,099,127 | 87 |
H3K27me3 (modENCODE,id 1820) | 13, 273,869 | 12,946,455 | 97 |
Input (modENCODE,id 1815) | 13,425,292 | 13,168,039 | 98 |
H3K27me3 (modENCODE,id 1957) | 11,997,853 | 11,807,914 | 98 |
Input (modENCODE,id 1961) | 15,685,299 | 15,402,582 | 98 |
H3K27me3-pooled(modENCODE, id 1820and 1957) | 25,081,783 | 24,754,369 | 98 |
Input-pooled(modENCODE,id 1815 and 1961) | 28,827,874 | 28,570,621 | 98 |