From: Is this the right normalization? A diagnostic tool for ChIP-seq normalization
TF or Modification | Default | CisGenome | NCIS | CCAT | Peak calling Algorithm |
---|---|---|---|---|---|
CTCF [38] | 22522 | 29841 | 30369 | 38339 | MACS |
H3K4me3 [38] | 16972 | 17400 | 17401 | 17403 | SICER |
H3K27me3 [38] | 10233 | 10844 | 11272 | 11271 | SICER |
H3K36me3-1 [38] | 10139 | 10676 | 10747 | 10752 | SICER |
H3K36me3-5 [38] | 13880 | 15192 | 15248 | 15257 | SICER |
H3K36me3-8 [38] | 14079 | 15454 | 15494 | 15564 | SICER |
H3K36me3-pooled [38] | 16326 | 18788 | 18729 | 18509 | SICER |
H3K27me3 (modENCODE:id 1820 vs id 1815) | 1037 | 1959 | 1955 | 2028 | SICER |
H3K27me3 (modENCODE:id 1957 vs id 1961) | 1026 | 1894 | 1893 | 1949 | SICER |
H3K27me3-pooled (modENCODE) | 1118 | 2068 | 2049 | 2172 | SICER |