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Table 2 The false positive control using the p-value adjustments on simulated data

From: DECODE: an integrated differential co-expression and differential expression analysis of gene expression data

# of genes ( m ) Average of maximum chi-square value Observed max. chi-square at α = 0.05 # of false positive at α = 0.05 # of sig. genes after 1st adjustment # of sig. genes after 2nd adjustment
10000 11.38 17.70 500 155 4
15000 11.79 17.97 750 215 7
20000 12.10 18.36 1000 231 13
25000 12.27 18.56 1250 280 11