From: MONALISA for stochastic simulations of Petri net models of biochemical systems
Snoopy | MonaLisa | |
---|---|---|
Availability | closed source | open source |
Biological terminology | no | yes |
Annotation facilities | no | MIRIAM Identifier and SBO terms |
Supported analysis techniques1 | no | P-Invariants, T-Invariants, Maximal Common Transitions sets, distance matrix, T-Cluster, Knock-out, Minimal Cut sets, node degrees |
Color highlighting of analysis results | no | yes - for Invariants, MCT-sets, and Knock-outs |
Supported simulation modes | P/T-net animation, Gillespie, FAU | Asynchronous, Synchronous, Stochastic, (Gillespie) |
Supported Petri net classes | 19 - for example: P/T-net, Fault Tree, Extended Fault Tree, Freestyle Net | P/T-nets |
Supported input file formats | ANDL, CANDL, APNN, SBML, PED, PNML, TINA, CSV, DNF | APNN, KEGG, METATOOL, PNML, PNT, SBML, SPEED |
Supported output file formats | 19 - for example: ANDL, CANDL, Maria, PEP, Prod | APNN, METATOOL, PNML, SBML, SVG, PNG, TXT, PNT |
Supported Operation Systems | Windows, MacOS X, Linux (selected distributions) | Windows, MacOS, Linux |
Software Platform | C++ | Java |
Editor UI | yes | yes |